View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10221_low_4 (Length: 324)

Name: NF10221_low_4
Description: NF10221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10221_low_4
NF10221_low_4
[»] chr3 (2 HSPs)
chr3 (21-316)||(3698854-3699158)
chr3 (32-151)||(3703777-3703894)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 3699158 - 3698854
Alignment:
Q  21 ctgtgatacagaaaaaccaaagttaaaaacacatgatacaaagggacgatgcagaa--------actatttctaa-gcaaatcctaatcacaatataaat 111  Q
    |||||| |||||||||| || |||||||||| ||||||||| |||  |||||||||        ||||||||||| ||||| || |||||||||||||||    
T  3699158 ctgtgacacagaaaaacaaatgttaaaaacatatgatacaa-gggctgatgcagaatagcataaactatttctaaagcaaagcc-aatcacaatataaat 3699061  T
Q  112 aaaacacacggatgcataatagcatgaacaactgctaaacaaatgttgttaaaaaactacaagtgaacattaaaatagcttttcaatttgagttgcggct 211  Q
    | ||||||  |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3699060 agaacaca--gatgcagaatagcatgaacaactgctaaacaaatgttgttaaaaaattacaagtgaacattaaaatagcttttcaatttgagttgcggct 3698963  T
Q  212 tagactaattctactgttactattctcttcatt----gtaacaaccatatttcaaactatagcaaactaacaaggataatgagttatttaccccttgatg 307  Q
    |||||||||||||||||||||||||||||||||    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| ||    
T  3698962 tagactaattctactgttactattctcttcattgctggtaacaaccgtattgtaaactatagcaaactaacaaggataatgagttatttaccccttggtg 3698863  T
Q  308 tccatctca 316  Q
    |||||||||    
T  3698862 tccatctca 3698854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 3703894 - 3703777
Alignment:
Q  32 aaaaaccaaagttaaaaacacatgatacaaagggacgatgcagaaactatttctaagcaaatcctaatcacaatataaataaaacacacggatgcataat 131  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3703894 aaaaaccaatgttaaaaaca--tgatacaaagggacgatgcagaaactatttctaagcaaatcctaatcacaatataaataaaacacacggatgcataat 3703797  T
Q  132 agcatgaacaactgctaaac 151  Q
    ||||||||||||||||||||    
T  3703796 agcatgaacaactgctaaac 3703777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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