View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10221_low_5 (Length: 269)
Name: NF10221_low_5
Description: NF10221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10221_low_5 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 4513652 - 4513895
Alignment:
| Q |
16 |
gttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4513652 |
gttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtt |
4513751 |
T |
|
| Q |
116 |
taactccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaagaattgcatcaaaccttttcgcgaactttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4513752 |
taactccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaagaattgcatcgaaccttttcgcgaactttt |
4513851 |
T |
|
| Q |
216 |
agctaaacttaatgactctgcaaaagccggtcttataccctttg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4513852 |
agctaaacttaatgactctgcaaaagccggtcttataccttttg |
4513895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 4507366 - 4507136
Alignment:
| Q |
16 |
gttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||| | || ||||||| |
|
|
| T |
4507366 |
gttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaactttgagactctaccagatggtt |
4507267 |
T |
|
| Q |
116 |
taactccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaagaattgcatcaaaccttttcgcgaactttt |
215 |
Q |
| |
|
|||||||||||||||| || |||||||| || || |||||||| |||| |||| ||||| || |||||||| | || | ||||||||||||||| | |
|
|
| T |
4507266 |
taactccaatggatgg---tgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaagaaatttatttacccttttcgcgaacttct |
4507170 |
T |
|
| Q |
216 |
agctaaacttaatgactctgcaaaagccggtctt |
249 |
Q |
| |
|
||||| |||| |||||||||| ||| | |||||| |
|
|
| T |
4507169 |
agctagacttgatgactctgcgaaatctggtctt |
4507136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 4517792 - 4517624
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
4517792 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaa |
4517693 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaagaatt |
190 |
Q |
| |
|
|||| || || ||||| |||||||| || ||||||| | || |||||| ||| ||||| |||||||||| |
|
|
| T |
4517692 |
ctccgatagaaggcga---tggtgatgttagtcaagacattatctctctttccgattcaataagaaagaatt |
4517624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 4581466 - 4581252
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
4581466 |
aacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttacctttgagactattccagatggtttaa |
4581367 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtggtgatgctactcaagacttgatat-ctcttcgcgaatcaatcagaaagaattgcatcaaaccttttcgcgaacttttag |
217 |
Q |
| |
|
|||| || || ||||| | |||||| || ||||||| | |||| |||| | ||||||||||||||||| | | | |||||||| | |||||| | | |
|
|
| T |
4581366 |
ctccgatagaaggcga---tagtgatgttaatcaagacat-atatgctctatgtgaatcaatcagaaagaacttcctacaacctttttgtgaacttcttg |
4581271 |
T |
|
| Q |
218 |
ctaaacttaatgactctgc |
236 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
4581270 |
ctagacttaatgactctgc |
4581252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 4488873 - 4488991
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| || |||||| |||||||||||||||| |||||||||| |
|
|
| T |
4488873 |
aacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttgagactattccagatggtttaa |
4488972 |
T |
|
| Q |
119 |
ctccaatggatggcgatgg |
137 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
4488973 |
ctccaacagatggtgatgg |
4488991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 4558577 - 4558459
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
4558577 |
aacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgagactattccggatggtttaa |
4558478 |
T |
|
| Q |
119 |
ctccaatggatggcgatgg |
137 |
Q |
| |
|
|||||| |||||| ||||| |
|
|
| T |
4558477 |
ctccaacggatggtgatgg |
4558459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 4612394 - 4612614
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||| |||||| ||||||| |||| || |||||| || |
|
|
| T |
4612394 |
aacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttgaggctataccagatggtctac |
4612493 |
T |
|
| Q |
119 |
ctccaatggatggcgatgg---tggtgatgctactcaagacttgatat-ctcttcgcgaatcaatcagaaagaattgcatcaaaccttttcgcgaacttt |
214 |
Q |
| |
|
|| ||| || |||||||| |||||||| || ||||||| | |||| ||||| | ||||||||||||||||| | | | ||||||||||||||||| |
|
|
| T |
4612494 |
cttcaaacgaaggcgatggtgatggtgatgttagtcaagacat-atatgctctttgtgaatcaatcagaaagaacttcctacaaccttttcgcgaactta |
4612592 |
T |
|
| Q |
215 |
tagctaaacttaatgactctgc |
236 |
Q |
| |
|
| ||| ||||||||||||||| |
|
|
| T |
4612593 |
tttctagacttaatgactctgc |
4612614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 4618756 - 4618633
Alignment:
| Q |
16 |
gttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || ||| |||||||| ||||| ||||||| |
|
|
| T |
4618756 |
gttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgagagcattccagatggtt |
4618657 |
T |
|
| Q |
116 |
taactccaatggatggcgatggtg |
139 |
Q |
| |
|
|||| |||||||| || ||||||| |
|
|
| T |
4618656 |
taacaccaatggaaggtgatggtg |
4618633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 4587084 - 4586855
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || ||||||| ||| ||||| ||||||| ||| || |||||| |||||||||||||||| |||||||||| |
|
|
| T |
4587084 |
aacactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagactattccagatggtttaa |
4586985 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaagaattgcatcaaaccttttcgcgaacttttagc |
218 |
Q |
| |
|
|||||| |||||| || |||||||| || ||||||| | ||||| | |||||||||||||||| | | | ||||||| ||||||||| | || |
|
|
| T |
4586984 |
ctccaacggatgg---tgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcgaacttcttgc |
4586888 |
T |
|
| Q |
219 |
taaacttaatgactctgcaaaagccggtcttat |
251 |
Q |
| |
|
|| ||||||||||||||||| | | |||||||| |
|
|
| T |
4586887 |
tagacttaatgactctgcaacatctggtcttat |
4586855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 4599615 - 4599495
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||| || | |||||||||| |||||| ||| ||||||||||| |||||||||| |
|
|
| T |
4599615 |
aacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgtaatggtttcactgatttttccttcgagactattccagatggtttaa |
4599516 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtg |
139 |
Q |
| |
|
||||||| ||||| ||||||| |
|
|
| T |
4599515 |
ctccaatagatggtgatggtg |
4599495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 4575910 - 4575795
Alignment:
| Q |
16 |
gttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtt |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||| |||||||||||| || ||||||| |
|
|
| T |
4575910 |
gttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggtt |
4575811 |
T |
|
| Q |
116 |
taactccaatggatgg |
131 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
4575810 |
taactccaaaggatgg |
4575795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 4623758 - 4623639
Alignment:
| Q |
20 |
acaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaac |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||| || ||| ||||||||| ||||| ||||||||||| |
|
|
| T |
4623758 |
acaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttgagaccattccagatggtttaac |
4623659 |
T |
|
| Q |
120 |
tccaatggatggcgatggtg |
139 |
Q |
| |
|
|||||||| || ||||||| |
|
|
| T |
4623658 |
accaatggaaggtgatggtg |
4623639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 4572418 - 4572300
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||||||| ||||| |||||||| |||||| ||||||||| |
|
|
| T |
4572418 |
aacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttgagagtattccagatggtttat |
4572319 |
T |
|
| Q |
119 |
ctccaatggatggcgatgg |
137 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
4572318 |
ctccaacggatggcgatgg |
4572300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 4502969 - 4503089
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||| || || |||||||||| |
|
|
| T |
4502969 |
aacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagaccataccagatggtttaa |
4503068 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtg |
139 |
Q |
| |
|
|||| |||| || ||||||| |
|
|
| T |
4503069 |
ctccggtggaaggtgatggtg |
4503089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 4562116 - 4561994
Alignment:
| Q |
16 |
gttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| || ||| |||||||||||| || ||||||| |
|
|
| T |
4562116 |
gttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggtt |
4562018 |
T |
|
| Q |
116 |
taactccaatggatggcgatggtg |
139 |
Q |
| |
|
||||||||| |||||| ||||||| |
|
|
| T |
4562017 |
taactccaaaggatggtgatggtg |
4561994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 3173455 - 3173335
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||| |||||||||||| || |||||||||| |
|
|
| T |
3173455 |
aacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaactttgagactataccagatggtttaa |
3173356 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtg |
139 |
Q |
| |
|
|| ||||||| || ||||||| |
|
|
| T |
3173355 |
cttcaatggaaggtgatggtg |
3173335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 4569514 - 4569423
Alignment:
| Q |
31 |
aatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaactcc |
122 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || || |||||||||||||| |||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
4569514 |
aatcacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaactcc |
4569423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 4482317 - 4482211
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||| || || |||||||||||||| |||||| |||||| || || || |||||||||| |
|
|
| T |
4482317 |
aacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttacctttgaaacgataccagatggtttaa |
4482218 |
T |
|
| Q |
119 |
ctccaat |
125 |
Q |
| |
|
||||||| |
|
|
| T |
4482217 |
ctccaat |
4482211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 4265733 - 4265867
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||| ||| || |||||||||||| || ||| |||||||| || || |||||| ||| |
|
|
| T |
4265733 |
aacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagtttgagaccataccagatggtctaa |
4265832 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtggtgatgctactcaagac |
156 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
4265833 |
ctccaatggaaggcaa---tggtgatgctactcaagac |
4265867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 4298174 - 4298340
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| ||||| || |||||||||||||||||| | ||| |||||||||||||||| |||||| | | |
|
|
| T |
4298174 |
aacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtctga |
4298273 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaagaa |
188 |
Q |
| |
|
|||||| ||| || || ||| |||| |||||||||| | ||||||| | |||||||||||||||| |
|
|
| T |
4298274 |
ctccaacggaagg---tgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaa |
4298340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 4603562 - 4603483
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| |||||| ||||||| |
|
|
| T |
4603562 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttga |
4603483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 4594462 - 4594342
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||| | | |||| ||||||| || || || |||||| ||| |
|
|
| T |
4594462 |
aacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaaccataccagatggtctaa |
4594363 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtg |
139 |
Q |
| |
|
| |||||||| || ||||||| |
|
|
| T |
4594362 |
caccaatggaaggtgatggtg |
4594342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 4627602 - 4627502
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||| || || |||||||||| |
|
|
| T |
4627602 |
aacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaa |
4627503 |
T |
|
| Q |
119 |
c |
119 |
Q |
| |
|
| |
|
|
| T |
4627502 |
c |
4627502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 4258852 - 4258970
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||||| |||||| | | |
|
|
| T |
4258852 |
aacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttgagactattcaagatggtctga |
4258951 |
T |
|
| Q |
119 |
ctccaatggatggcgatgg |
137 |
Q |
| |
|
||||| |||| || ||||| |
|
|
| T |
4258952 |
ctccagtggaaggtgatgg |
4258970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 4471366 - 4471257
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||||||||| || || ||||||||||||| || ||| ||||||||| ||||| ||||||| | |
|
|
| T |
4471366 |
aacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactgactttaactttgagaccattccaaatggtttta |
4471267 |
T |
|
| Q |
119 |
ctccaatgga |
128 |
Q |
| |
|
|| ||||||| |
|
|
| T |
4471266 |
ctgcaatgga |
4471257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 4255485 - 4255545
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtt |
79 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||| || || |||||||||| |
|
|
| T |
4255485 |
aacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt |
4255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 4462659 - 4462562
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggttt |
116 |
Q |
| |
|
||||| |||||||||||||| | |||||||| ||||||||||||||| || | ||||||||||| || ||| ||||||||| ||||| ||||||| |
|
|
| T |
4462659 |
aacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttgagaccattccaaatggttt |
4462562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 4483534 - 4483569
Alignment:
| Q |
26 |
aatacaatcacaaacgtttgctcaaatcaagaggtc |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483534 |
aatacaatcacaaacgtttgctcaaatcaagaggtc |
4483569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 4565481 - 4565421
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtt |
79 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| || ||||||| |
|
|
| T |
4565481 |
aacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggtt |
4565421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 4496222 - 4496188
Alignment:
| Q |
27 |
atacaatcacaaacgtttgctcaaatcaagaggtc |
61 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4496222 |
atacaatgacaaacgtttgctcaaatcaagaggtc |
4496188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 2276 - 2110
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| |||| ||||||||||| |||||||||| |
|
|
| T |
2276 |
aacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggtttaa |
2177 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaa |
185 |
Q |
| |
|
||||| |||| | |||| |||| ||| || ||||||| | | |||||| | ||||||||||||| |
|
|
| T |
2176 |
ctccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaa |
2110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 2127 - 2293
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| |||| ||||||||||| |||||||||| |
|
|
| T |
2127 |
aacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggtttaa |
2226 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaa |
185 |
Q |
| |
|
||||| |||| | |||| |||| ||| || ||||||| | | |||||| | ||||||||||||| |
|
|
| T |
2227 |
ctccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaa |
2293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 3088194 - 3088088
Alignment:
| Q |
22 |
accgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaactc |
121 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||||| || ||||||||||||| |||||| |||||||||||| | |||||| |||||| |
|
|
| T |
3088194 |
accgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatccaagatggtctaactc |
3088095 |
T |
|
| Q |
122 |
caatgga |
128 |
Q |
| |
|
||||||| |
|
|
| T |
3088094 |
caatgga |
3088088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 24104547 - 24104427
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| ||||||| || |||||||||||| || ||| ||||||||| || || |||||| ||| |
|
|
| T |
24104547 |
aacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttgagaccataccagatggtctaa |
24104448 |
T |
|
| Q |
119 |
ctccaatggatggcgatggtg |
139 |
Q |
| |
|
|||||||||| ||| |||||| |
|
|
| T |
24104447 |
ctccaatggaaggcaatggtg |
24104427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 1210 - 1110
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||| |||||| ||||||| || || || |||||| ||| |
|
|
| T |
1210 |
aacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtctaa |
1111 |
T |
|
| Q |
119 |
c |
119 |
Q |
| |
|
| |
|
|
| T |
1110 |
c |
1110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 1675973 - 1675873
Alignment:
| Q |
19 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaa |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||| |||||| ||||||| || || || |||||| ||| |
|
|
| T |
1675973 |
aacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtctaa |
1675874 |
T |
|
| Q |
119 |
c |
119 |
Q |
| |
|
| |
|
|
| T |
1675873 |
c |
1675873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 20862492 - 20862587
Alignment:
| Q |
25 |
gaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaact |
120 |
Q |
| |
|
||||||||||||||||| ||||| || |||| ||||| | | |||||||||||||| || |||||||||||||| |||| ||||||| |||| |
|
|
| T |
20862492 |
gaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggttcaact |
20862587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 16685029 - 16685081
Alignment:
| Q |
85 |
gattttcgctttgagactattcctgatggtttaactccaatggatggcgatgg |
137 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||||| |||||| ||||| |
|
|
| T |
16685029 |
gattttagctttgagactattccatatggtttacctccaacggatggtgatgg |
16685081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 1282888 - 1282785
Alignment:
| Q |
16 |
gttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtt |
115 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||| |||||| ||||||| || || || |||||| |
|
|
| T |
1282888 |
gttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccatcccagatggtc |
1282789 |
T |
|
| Q |
116 |
taac |
119 |
Q |
| |
|
|||| |
|
|
| T |
1282788 |
taac |
1282785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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