View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10221_low_7 (Length: 251)

Name: NF10221_low_7
Description: NF10221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10221_low_7
NF10221_low_7
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-241)||(448499-448739)
[»] chr7 (3 HSPs)
chr7 (10-100)||(31206869-31206958)
chr7 (10-58)||(31210301-31210349)
chr7 (194-238)||(13815709-13815753)
[»] chr1 (1 HSPs)
chr1 (9-100)||(4242802-4242891)
[»] chr4 (4 HSPs)
chr4 (10-100)||(44643240-44643329)
chr4 (9-99)||(6668000-6668093)
chr4 (13-70)||(4746980-4747037)
chr4 (23-94)||(6671672-6671746)
[»] scaffold0807 (2 HSPs)
scaffold0807 (12-116)||(5522-5625)
scaffold0807 (197-238)||(5402-5443)
[»] scaffold0216 (1 HSPs)
scaffold0216 (9-116)||(11899-12008)
[»] chr2 (3 HSPs)
chr2 (10-100)||(32424779-32424867)
chr2 (17-79)||(27107098-27107160)
chr2 (192-238)||(27107272-27107318)
[»] scaffold0028 (2 HSPs)
scaffold0028 (16-79)||(127497-127560)
scaffold0028 (16-79)||(109915-109978)
[»] chr8 (1 HSPs)
chr8 (9-99)||(21346855-21346947)
[»] scaffold0933 (1 HSPs)
scaffold0933 (10-53)||(1348-1391)
[»] chr6 (4 HSPs)
chr6 (189-238)||(19973647-19973696)
chr6 (194-238)||(3835762-3835806)
chr6 (194-238)||(24045025-24045069)
chr6 (189-240)||(19976065-19976116)
[»] scaffold0076 (1 HSPs)
scaffold0076 (194-235)||(6865-6906)
[»] chr5 (1 HSPs)
chr5 (206-238)||(16819587-16819619)


Alignment Details
Target: scaffold0002 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 448499 - 448739
Alignment:
Q  1 ttactttaatttttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaaaactcacggtcctttattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  448499 ttactttaatttttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaaaactcacggtcctttattttt 448598  T
Q  101 gacctagaaaaagcactcatgacagagaacctagctctgcatnnnnnnnnnnnttattttcctcttccttagaaaatcaaggttatgcttcctggttgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||    
T  448599 gacctagaaaaagcactcatgacagagaacctagctctgcataaaaaaaaaaattattttcctcttccttagaaaatcaaggttatgcttcctggttgca 448698  T
Q  201 tctcctgtgtttatcagattcaagttgttttgtcacctttg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  448699 tctcctgtgtttatcagattcaagttgttttgtcacctttg 448739  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 31206958 - 31206869
Alignment:
Q  10 tttttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaaaactcacggtcctttattttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| |||||| ||||||    
T  31206958 tttttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagtcttctcacaataaaaaaaactcac-gtccttcattttt 31206869  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 31210349 - 31210301
Alignment:
Q  10 tttttgctttgaccatgtgttaattacttcctaattataaggaaccacc 58  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  31210349 tttttgctttgatcatgtgttaattacttcctaattataagaaaccacc 31210301  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 13815709 - 13815753
Alignment:
Q  194 ggttgcatctcctgtgtttatcagattcaagttgttttgtcacct 238  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||    
T  13815709 ggttgcatctcttgtgtttatcagattcaagctgttctgtcacct 13815753  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 4242891 - 4242802
Alignment:
Q  9 atttttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaaaactcacggtcctttattttt 100  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||||||||| ||||||    
T  4242891 atttttgctttgatcatgtgttaattacttactaattataaggaaccaccaagtctgctcacaataag--aaactcacggtccttcattttt 4242802  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 44643240 - 44643329
Alignment:
Q  10 tttttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaaaactcacggtcctttattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| |||||||||| |||||| ||||||    
T  44643240 tttttgctttgaccatgtgttaattacttcctaattatatggaaccaccaagtcttctcacaataaaaaaaactcac-gtccttcattttt 44643329  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 6668093 - 6668000
Alignment:
Q  9 atttttgctttgaccatgtgttaattacttcctaattataagg-aaccaccaagcctgctcacaataaga--aaaactcacggtcctttatttt 99  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||  ||||||| ||| ||||| ||||  | ||||||||||||||| ||||    
T  6668093 atttttactttgaccatgtgttaattacttcctaattataaggaaattaccaagcttgcacacaagaagaagacaactcacggtcctttgtttt 6668000  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 4746980 - 4747037
Alignment:
Q  13 ttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcac 70  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||    
T  4746980 ttgctttgaccaagtgataattacttcctaattataaggaaccaccaaacttgctcac 4747037  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 6671746 - 6671672
Alignment:
Q  23 catgtgttaattacttcctaattataagg-aaccaccaagcctgctcacaataaga--aaaactcacggtccttt 94  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| ||||  |||||||||||||||||    
T  6671746 catgtgttaattacttcctaattataaggaaactaccaagcttgcacacaagaagaagaaaactcacggtccttt 6671672  T

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Target: scaffold0807 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 5625 - 5522
Alignment:
Q  12 tttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaaaactcacggtcctttatttttgac-ctagaaa 110  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||  |||||||| ||||||||||||| ||  ||||||    
T  5625 tttgctttgaccatttgtgaattacttcctaattacaaggaaccaccaaccctgctcacaataag--aaactcacagtcctttatttttcacagtagaaa 5528  T
Q  111 aagcac 116  Q
    ||||||    
T  5527 aagcac 5522  T

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Target: scaffold0807; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 5443 - 5402
Alignment:
Q  197 tgcatctcctgtgtttatcagattcaagttgttttgtcacct 238  Q
    |||||||| ||||||||| | |||||||||||||||||||||    
T  5443 tgcatctcatgtgtttattatattcaagttgttttgtcacct 5402  T

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Target: scaffold0216 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 11899 - 12008
Alignment:
Q  9 atttttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagc---ctgctcacaataagaaaaactcacggtcctttatttttgac-c 104  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||   ||||||||||||||  |||||||||||||||| ||||| ||      
T  11899 atttttgctttgaccatgtgttaattacttcctaattacatggaaccaccaagcgtgctgctcacaataag--aaactcacggtcctttgtttttcacag 11996  T
Q  105 tagaaaaagcac 116  Q
    ||||||||||||    
T  11997 tagaaaaagcac 12008  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 32424779 - 32424867
Alignment:
Q  10 tttttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaaaactcacggtcctttattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| | |||||||| |||||| ||||||    
T  32424779 tttttgctttgaccatgtgttaattacttcctaattataaggaaccacc-agtcttctcacaataaaagaaactcac-gtccttcattttt 32424867  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 27107098 - 27107160
Alignment:
Q  17 tttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaa 79  Q
    |||||||||||||| || ||||||||||||||||||||||| ||| || ||||||||||||||    
T  27107098 tttgaccatgtgtttataacttcctaattataaggaaccacaaagtcttctcacaataagaaa 27107160  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 27107272 - 27107318
Alignment:
Q  192 ctggttgcatctcctgtgtttatcagattcaagttgttttgtcacct 238  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||    
T  27107272 ctgggtgcatctcctgtgtttatcagattcaagctgttctgtcacct 27107318  T

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Target: scaffold0028 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 127497 - 127560
Alignment:
Q  16 ctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaa 79  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||    
T  127497 ctttgaccatgtgtttataacttcctaattataaggaaccaccaagccttctcacaataagaaa 127560  T

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Target: scaffold0028; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 109915 - 109978
Alignment:
Q  16 ctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaa 79  Q
    ||||||||||||||| || |||||||||||||||||||| |||||| || ||||||||||||||    
T  109915 ctttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctcacaataagaaa 109978  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 21346855 - 21346947
Alignment:
Q  9 atttttgctttgaccatgtgttaattacttcctaattataagg-aaccaccaagcctgctcacaataag-aaaaactcacggtcctttatttt 99  Q
    |||||| ||||||| |||||||||||||||||| ||||||||| ||| | ||||||||| ||||| ||| |||||||||||||||||||||||    
T  21346855 attttttctttgacgatgtgttaattacttcctcattataaggaaactaacaagcctgcacacaagaagaaaaaactcacggtcctttatttt 21346947  T

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Target: scaffold0933 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 1391 - 1348
Alignment:
Q  10 tttttgctttgaccatgtgttaattacttcctaattataaggaa 53  Q
    ||||| |||||||||||||||||||||||||| |||||||||||    
T  1391 ttttttctttgaccatgtgttaattacttcctgattataaggaa 1348  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 19973647 - 19973696
Alignment:
Q  189 ttcctggttgcatctcctgtgtttatcagattcaagttgttttgtcacct 238  Q
    ||||||| |||||||||||||||||||| |||| ||||||| ||||||||    
T  19973647 ttcctgggtgcatctcctgtgtttatcaaattcgagttgttctgtcacct 19973696  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 3835806 - 3835762
Alignment:
Q  194 ggttgcatctcctgtgtttatcagattcaagttgttttgtcacct 238  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||||    
T  3835806 ggttgcatctcttgtgtttatcaaattcaagttgttctgtcacct 3835762  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 24045069 - 24045025
Alignment:
Q  194 ggttgcatctcctgtgtttatcagattcaagttgttttgtcacct 238  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||    
T  24045069 ggttgcatctcctgtgtttatcatatttaagttgttctgtcacct 24045025  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 19976065 - 19976116
Alignment:
Q  189 ttcctggttgcatctcctgtgtttatcagattcaagttgttttgtcaccttt 240  Q
    ||||||||| ||||||||||| |||||| |||| ||||||| ||||||||||    
T  19976065 ttcctggtttcatctcctgtggttatcaaattcgagttgttctgtcaccttt 19976116  T

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Target: scaffold0076 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 6906 - 6865
Alignment:
Q  194 ggttgcatctcctgtgtttatcagattcaagttgttttgtca 235  Q
    |||| |||||||||||||||||| |||||||||||| |||||    
T  6906 ggttacatctcctgtgtttatcaaattcaagttgttctgtca 6865  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 16819587 - 16819619
Alignment:
Q  206 tgtgtttatcagattcaagttgttttgtcacct 238  Q
    |||||||||||||||||| ||||||||||||||    
T  16819587 tgtgtttatcagattcaaattgttttgtcacct 16819619  T

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