View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10222_high_1 (Length: 630)
Name: NF10222_high_1
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10222_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 34496354 - 34495744
Alignment:
| Q |
1 |
ttttcttccctccttttagtccaaatgcaattcctcataaatttgaaaagcatgttcattatgtaacactaatgttaagcttttgcagtgaccctgatac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34496354 |
ttttcttcactccttttagtccaaatgcaattcctcataaatttgaaaagcctgttcattatgtaacactaatgttaagcttttgcagtgaccctgatac |
34496255 |
T |
|
| Q |
101 |
atattattctgtcaatttcaatcttcggcttcattctcacccgatagctggtaaatgcaggtgagggcaatgcagttaatcgatgaattggaggtggcaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34496254 |
atattatcctgtcaatttcaatctttggcttcattctcacccgataactggtaaatgcaggtgagggcaatgcagttaatcgatgaattggaggtggcaa |
34496155 |
T |
|
| Q |
201 |
gacggggaccttatagcggaggatttggatatatatctttctccggcgatatggacattgctctagctctaaggacaatagtatttccaactgggactag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34496154 |
gacggggaccttatagcggaggatttggatatatatctttctccggcgacatggacattgctctagctctaaggacaatagtatttccaactgggactag |
34496055 |
T |
|
| Q |
301 |
gtacgatacaatgtactcgtataaagacctaaacaaacgccaagagtggattgcttaccttcaagctggtgccggtattgttgccgacagtgaccctgct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
34496054 |
gtacgatacaatgtactcgtataaagacctaaacaaacgacaagagtggattgcttaccttcaagctggtgctggtattgttgccgacagtgaccctgcc |
34495955 |
T |
|
| Q |
401 |
gatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgctttcgttcataaataagatctctgatacctcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34495954 |
gatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgctttcgttcataaataagatctctgatacctcc |
34495855 |
T |
|
| Q |
501 |
aaatcgaatcattggatatacaattagtggattaccatttactataagaataaattcctatgcaaagaagctcttgattgtgtgatatctcatttgtttg |
600 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
34495854 |
aaatcaaatcattggatatacaattagtggattaccatttactataagaataaattcctatgcaaagaagctcttgattgtgtgatatcccatttgtttg |
34495755 |
T |
|
| Q |
601 |
tctgaacaagt |
611 |
Q |
| |
|
||||||||||| |
|
|
| T |
34495754 |
tctgaacaagt |
34495744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 27607901 - 27607291
Alignment:
| Q |
1 |
ttttcttccctccttttagtccaaatgcaattcctcataaatttgaaaagcatgttcattatgtaacactaatgttaagcttttgcagtgaccctgatac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27607901 |
ttttcttcactccttttagtccaaatgcaattcctcataaatttgaaaagcctgttcattatgtaacactaatgttaagcttttgcagtgaccctgatac |
27607802 |
T |
|
| Q |
101 |
atattattctgtcaatttcaatcttcggcttcattctcacccgatagctggtaaatgcaggtgagggcaatgcagttaatcgatgaattggaggtggcaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27607801 |
atattatcctgtcaatttcaatcttaggcttcattctaacccgataactggtaaatgcaggtgagggcaatgcagttaatcgatgaattggaggtggcaa |
27607702 |
T |
|
| Q |
201 |
gacggggaccttatagcggaggatttggatatatatctttctccggcgatatggacattgctctagctctaaggacaatagtatttccaactgggactag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27607701 |
gacggggaccttatagcggaggatttggatatatatctttctccggcgacatggacatagctctagctctaaggacaatagtatttccaactgggactag |
27607602 |
T |
|
| Q |
301 |
gtacgatacaatgtactcgtataaagacctaaacaaacgccaagagtggattgcttaccttcaagctggtgccggtattgttgccgacagtgaccctgct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
27607601 |
gtacgatacaatgtactcgtataaagacctaaacaaacgacaagagtggattgcttaccttcaagctggtgcaggtattgttgccgacagtgaccctgcc |
27607502 |
T |
|
| Q |
401 |
gatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgctttcgttcataaataagatctctgatacctcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27607501 |
gatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgctttcgttcataaataagatctctgatacctcc |
27607402 |
T |
|
| Q |
501 |
aaatcgaatcattggatatacaattagtggattaccatttactataagaataaattcctatgcaaagaagctcttgattgtgtgatatctcatttgtttg |
600 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27607401 |
aaatcaaatcattggatatacaattagtggattaccatttactataagaataaattactatgcaaagaagctcttgattgtgtgatatctcatttgtttg |
27607302 |
T |
|
| Q |
601 |
tctgaacaagt |
611 |
Q |
| |
|
||||||||||| |
|
|
| T |
27607301 |
tctgaacaagt |
27607291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 5 - 611
Target Start/End: Original strand, 31506409 - 31507015
Alignment:
| Q |
5 |
cttccctccttttagtccaaatgcaattcctcataaatttgaaaagcatgttcattatgtaacactaatgttaagcttttgcagtgaccctgatacatat |
104 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| || ||||||||||| | |||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
31506409 |
cttcactccttttagtccaaatacaattccccacaaatttgaaaaacctgttcattatgtggcactaatgttaagcttttgcagttaccttgatacatat |
31506508 |
T |
|
| Q |
105 |
tattctgtcaatttcaatcttcggcttcattctcacccgatagctggtaaatgcaggtgagggcaatgcagttaatcgatgaattggaggtggcaagacg |
204 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
31506509 |
tatcctgtcaatttcaatcttcagcttcattctaacctgataactggtaaatgcaggtgagggcaatgcagttaatcgatgaattggaggtgtcaaggcg |
31506608 |
T |
|
| Q |
205 |
gggaccttatagcggaggatttggatatatatctttctccggcgatatggacattgctctagctctaaggacaatagtatttccaactgggactaggtac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31506609 |
aggaccttatagcggaggatttggatatatatctttctctggcgacatggacattgctctagctctaaggacaatagtatttccaactgggactaggtac |
31506708 |
T |
|
| Q |
305 |
gatacaatgtactcgtataaagacctaaacaaacgccaagagtggattgcttaccttcaagctggtgccggtattgttgccgacagtgaccctgctgatg |
404 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31506709 |
gacacaatgtactcgtataaagacctaaacaaacgccaagagtggattgcttaccttcaagctggtgccggtattgttgccgacagtgaccctgccgatg |
31506808 |
T |
|
| Q |
405 |
agcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgctttcgttcataaataagatctctgatacctccaaat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31506809 |
agcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgctttcattcataaataagatctctgatacctccaaat |
31506908 |
T |
|
| Q |
505 |
cgaatcattggatatacaattagtggattaccatttactataagaataaattcctatgcaaagaagctcttgattgtgtgatatctcatttgtttgtctg |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
31506909 |
cgaatcattggatatacaattagtggattaccatttactataacaatatagtcctatgctgggaagctcttgattgtgtgatatctcttttgtttgtttg |
31507008 |
T |
|
| Q |
605 |
aacaagt |
611 |
Q |
| |
|
||||||| |
|
|
| T |
31507009 |
aacaagt |
31507015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 51683127 - 51683042
Alignment:
| Q |
194 |
gtggcaagacggggaccttatagcggaggatttggatatatatctttctccggcgatatggacattgctctagctctaaggacaat |
279 |
Q |
| |
|
||||||||||| || || ||||| || ||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
51683127 |
gtggcaagacgtggtccatatagtggtggatttggaggcatatctttttccggtgatatggacattgctcttgctctgaggacaat |
51683042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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