View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10222_high_10 (Length: 256)
Name: NF10222_high_10
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10222_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 46401607 - 46401366
Alignment:
| Q |
15 |
cacagagagtatgagcaagttgtgttttcccagatctgaatacataaagtgctattattagcataaacttcttctgaaactgaaaatgaataaaatctat |
114 |
Q |
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| T |
46401607 |
cacagagagtatgagcaagttgtgttttcccagatctgaatacataaagtgctattattagcataaacttcttctgaaactgaaaatgaataaaatctat |
46401508 |
T |
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| Q |
115 |
ttgaaactagttacatgctgtattcataccggaattctccgaatgcttcagtaatcgacagtgtctcgattccacctttttcaaacattaagaagaaatt |
214 |
Q |
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| T |
46401507 |
ttgaaactagttacatgctgtattcataccggaattctccgaatgcttcagtaatcgacagtgtctcgattccacctttttcaaacattaagaagaaatt |
46401408 |
T |
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| Q |
215 |
caaagagaaaataattacaaacatataggattcaaaattaac |
256 |
Q |
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| T |
46401407 |
caaagagaaaataattacaaacatataggattcaaaattaac |
46401366 |
T |
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