View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10222_high_11 (Length: 254)
Name: NF10222_high_11
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10222_high_11 |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 9506 - 9704
Alignment:
| Q |
12 |
gaaatgaatcaaagttgtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtgga |
111 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9506 |
gaaatgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtgga |
9605 |
T |
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| Q |
112 |
tgtagttcttctgcaacatgtcaaaattggctgctatagaaaaataaataattagtgaatgacggtggaaaaaaacaagctgtgaaggcacatggccat |
210 |
Q |
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| T |
9606 |
tgtagttcttctgcaacatgtcaaaattggctgctatagaaaaataaataattagtgaatgacagtgggaaaaaacaagtgttgaaggcacatggccat |
9704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 13854 - 14043
Alignment:
| Q |
12 |
gaaatgaatcaaagttgtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtgga |
111 |
Q |
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| T |
13854 |
gaaatgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtgga |
13953 |
T |
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| Q |
112 |
tgtagttcttctgcaacatgtcaaaattggctgctatagaaaaataaataattagtgaatgacggtggaaaaaaacaagctgtgaaggcacatggccat |
210 |
Q |
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| T |
13954 |
tgtagttcttc---------tccaaattggctgctatagaaaaataaataattagtgaatgacagtaggaaaaaacaagttgtgaaggcacatggccat |
14043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 10169 - 10324
Alignment:
| Q |
55 |
ggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgcaacatgtcaaaattggctgctatagaaaa |
154 |
Q |
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| T |
10169 |
ggaagatgaaatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaattgactgctatagaaaa |
10268 |
T |
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| Q |
155 |
ataaataattagtgaatgacggtggaaaaaaacaagctgtgaaggcacatggccat |
210 |
Q |
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| T |
10269 |
ttaaataattagtgaatgacagtggcaaaaaacaagttgtgaaggcacatggccat |
10324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 16782104 - 16782253
Alignment:
| Q |
12 |
gaaatgaatcaaagttgtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtgga |
111 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16782104 |
gaaatgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatctattaaatcagtgga |
16782203 |
T |
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| Q |
112 |
tgtagttcttctgcaacatgtcaaaattggctgctatagaaaaataaata |
161 |
Q |
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| T |
16782204 |
tgtagtttttctgcaacttgtgaatattggttgctatagaaaaaaaaata |
16782253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 16867150 - 16867041
Alignment:
| Q |
28 |
gtttggattggagat-gactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgca |
126 |
Q |
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|||||| |||||||| ||||||||| | ||||| |||| |||| ||||||||||||||||| | |||| |||||| || |||| || |||||| |||| |
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| T |
16867150 |
gtttggtttggagatagactttgcttttggaagttgaa-tatgctttgttatttgttttcaagggttatttattaactcggtggttgcagttctgatgca |
16867052 |
T |
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| Q |
127 |
acatgtcaaaa |
137 |
Q |
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|| |||||||| |
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| T |
16867051 |
acttgtcaaaa |
16867041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 38938502 - 38938380
Alignment:
| Q |
28 |
gtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgcaa |
127 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
38938502 |
gtttggattggagatg-ctttgctctaggaagatgaaatatgtgtagttattttttttcaaagattgtctattaaatcagtggatgtagttcttctgcaa |
38938404 |
T |
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| Q |
128 |
catgtcaaaattggctgctataga |
151 |
Q |
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| T |
38938403 |
cttgtcaatattggctgctgtaga |
38938380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 11983167 - 11983113
Alignment:
| Q |
28 |
gtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgt |
82 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |
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| T |
11983167 |
gtttggattggagatgactttgctctatgaagatgaaatatgcgttattatttgt |
11983113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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