View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10222_high_14 (Length: 221)
Name: NF10222_high_14
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10222_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 38605236 - 38605424
Alignment:
| Q |
15 |
cacagaaaaagtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagggattccaaaacaggggtagtgatga |
114 |
Q |
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| T |
38605236 |
cacagaaaaagtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagagattccaaaacaggggtagtgatga |
38605335 |
T |
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| Q |
115 |
gatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaaacctttggggtttcaactggtatagtttgacag |
203 |
Q |
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| T |
38605336 |
gatgtgaattactcctaaaagcccacttgataaagtgaataagaatatgaggagaaacctttggggtttcaactggtatagtttgacag |
38605424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 40180851 - 40180884
Alignment:
| Q |
84 |
acaagggattccaaaacaggggtagtgatgagat |
117 |
Q |
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| T |
40180851 |
acaagggattccagaacaggggtagtgatgagat |
40180884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 44460121 - 44459998
Alignment:
| Q |
72 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat |
162 |
Q |
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| T |
44460121 |
catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat |
44460022 |
T |
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| Q |
163 |
gaggagaaacctttggggtttcaa |
186 |
Q |
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|||| ||||||||||||||||||| |
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| T |
44460021 |
gaggcgaaacctttggggtttcaa |
44459998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 44467654 - 44467531
Alignment:
| Q |
72 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat |
162 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||| | || | ||||| | |||||||||| |||||||| |||||||||| |
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| T |
44467654 |
catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat |
44467555 |
T |
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| Q |
163 |
gaggagaaacctttggggtttcaa |
186 |
Q |
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|||| ||||||||||||||||||| |
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| T |
44467554 |
gaggcgaaacctttggggtttcaa |
44467531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 34502528 - 34502651
Alignment:
| Q |
72 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaat---------tactcctaaaagcccacttgat-aaagtgaataagatta |
161 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||| ||||||||| || | ||||| |||||||||| || |||||| ||||||||| |
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| T |
34502528 |
catattgctgaaacaagggattccagaacaagggtagtaatgagatgtttataagtgttcctcctcctccaagcccacttcataaaagtggataagatta |
34502627 |
T |
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| Q |
162 |
tgaggagaaacctttggggtttca |
185 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
34502628 |
tgaggcgaaacctttggggtttca |
34502651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 44459420 - 44459376
Alignment:
| Q |
71 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgag |
115 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
44459420 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgag |
44459376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 44466953 - 44466909
Alignment:
| Q |
71 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgag |
115 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
44466953 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgag |
44466909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 46358991 - 46358947
Alignment:
| Q |
71 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgag |
115 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
46358991 |
gcatatttctgaaacaagggattccagaacaggggtagtgatgag |
46358947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 410732 - 410692
Alignment:
| Q |
71 |
gcatattgctgaaacaagggattccaaaacaggggtagtga |
111 |
Q |
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|||||||||||||| |||||| |||| |||||||||||||| |
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| T |
410732 |
gcatattgctgaaataagggactccagaacaggggtagtga |
410692 |
T |
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