View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10222_high_9 (Length: 259)
Name: NF10222_high_9
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10222_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 41171205 - 41171451
Alignment:
| Q |
2 |
acacatttagggtctcagactcaaataggattaccttcattggtggagatctatggaaaacaacaacnnnnnnntggtaattttttctagtataaaaaac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
41171205 |
acacatttagggtctcagactcaaataggattaccttcattggtggagatctatggaaaacaacaacaaaaaa-tggtaattttttctagtataaaaatc |
41171303 |
T |
|
| Q |
102 |
ttcatgaagagaaaaaatttgttctatttcaaagtcaaagccctgccacaaataaaatttgtaaatttaatatacaaattaccaactaaaaccataaact |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41171304 |
ttcatgaagagaaaaaatttgttctatttcaaagtcaaagacctgccacaaataaaatttgtaaatttaatttacaaattaccaactaaaaccataaact |
41171403 |
T |
|
| Q |
202 |
tgaaagtactccgacggaacgatagttttacagcacaaatgatgtcca |
249 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41171404 |
tgaaagtattccgacggaacgatagttttacagcacaaatgatgtcca |
41171451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 41163520 - 41163594
Alignment:
| Q |
133 |
aagtcaaagccctgccacaaataaaatttgtaaatttaatatacaaattaccaactaaaaccataaacttgaaag |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||||| |
|
|
| T |
41163520 |
aagtcaaagacctgccacaaataaaatttgtaaatttaacttacaaatgtctaaataaaaccataaacttgaaag |
41163594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 41146765 - 41146838
Alignment:
| Q |
81 |
attttttctagtataaaaaacttcatgaagagaaaaaatt-tgttctatttcaaagtcaaagccctgccacaaa |
153 |
Q |
| |
|
||||||||||||| ||||||| ||||||| |||| ||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
41146765 |
attttttctagtagaaaaaacctcatgaaaagaataaattgggttctattccaaagtcaaatacctgccacaaa |
41146838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 32581716 - 32581834
Alignment:
| Q |
125 |
ctatttcaaagtcaaagccctgccacaaataaaatttgtaaatttaatatacaaattaccaactaaaaccataaacttgaaagtactccgacggaac-ga |
223 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| || ||||||||| |||||||| | ||||||||||||||||||||||| ||| ||| ||| | |
|
|
| T |
32581716 |
ctattccaaagtcaaagacctggcacaaataaacttcttaaatttaacatacaaatatctaactaaaaccataaacttgaaagcgctctgactaaacggc |
32581815 |
T |
|
| Q |
224 |
tagttttacagcacaaatg |
242 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
32581816 |
tagttttacagcacaaatg |
32581834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 32630945 - 32631060
Alignment:
| Q |
125 |
ctatttcaaagtcaaagccctgccacaaataaaatttgtaaatttaatatacaaattaccaactaaaaccataaacttgaaagtactccgacggaac-ga |
223 |
Q |
| |
|
||||| ||||||||||| || |||||||||||| ||| ||||||||| ||||||| | |||||||||| |||||||||||| ||| ||| ||| | |
|
|
| T |
32630945 |
ctattccaaagtcaaagacccgccacaaataaactttttaaatttaacttacaaatgtctaactaaaaccgtaaacttgaaagcgctctgactaaacggc |
32631044 |
T |
|
| Q |
224 |
tagttttacagcacaa |
239 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32631045 |
tagttttacagcacaa |
32631060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University