View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10222_low_17 (Length: 245)
Name: NF10222_low_17
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10222_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 9159190 - 9159406
Alignment:
| Q |
19 |
ataatgctataaagatatttttcctctttcatcaagcagaattcatcaataagggctctgt-gtatcttcctcaataaaaccaactgagtctgattcaat |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9159190 |
ataatgctataaagatatttttcctcattcatcaagcagaattcatcaataagggctctgttgtatcttcctcaataaaaccaactgagtctgattcaat |
9159289 |
T |
|
| Q |
118 |
ttcattagacttgacttctaggtcttcctcaataatttcatttggacggaaagaaggttttggaggcatttcaatattctctatatttccttcgagcatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9159290 |
ttcattagacttgacttctaggtcttcctcaataatttcatttggacagaaagaaggttttggaggcatttcaatattctcaatatttccttcgagcatc |
9159389 |
T |
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| Q |
218 |
tctattactttgttcat |
234 |
Q |
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||||||||||||||||| |
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| T |
9159390 |
tctattactttgttcat |
9159406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 9318710 - 9318586
Alignment:
| Q |
110 |
gattcaatttcattagacttgacttctaggtcttcctcaataatttcatttggacggaaagaaggttttggaggcatttcaatattctctatatttcctt |
209 |
Q |
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||||||||||||||||| ||||| || |||||||||| ||| |||||||||||| ||||| || |||||||||||||||||||| || |||||||||| |
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| T |
9318710 |
gattcaatttcattagagttgacgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttcctt |
9318611 |
T |
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| Q |
210 |
cgagcatctctattactttgttcat |
234 |
Q |
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| T |
9318610 |
caagcatctctatcactttgttcat |
9318586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 9319592 - 9319716
Alignment:
| Q |
110 |
gattcaatttcattagacttgacttctaggtcttcctcaataatttcatttggacggaaagaaggttttggaggcatttcaatattctctatatttcctt |
209 |
Q |
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||||||||||||||||| |||| || |||||||||| ||| |||||||||||| ||||| || |||||||||||||||||||| || |||||||||| |
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| T |
9319592 |
gattcaatttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttcctt |
9319691 |
T |
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| Q |
210 |
cgagcatctctattactttgttcat |
234 |
Q |
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| ||||||||||| ||||||||||| |
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| T |
9319692 |
caagcatctctatcactttgttcat |
9319716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 9348969 - 9348845
Alignment:
| Q |
110 |
gattcaatttcattagacttgacttctaggtcttcctcaataatttcatttggacggaaagaaggttttggaggcatttcaatattctctatatttcctt |
209 |
Q |
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|
||||||||||||||||| | |||||||||||||| || |||| |||||| |||| | |||||| ||||||||||||||||||| ||| |||| ||||| |
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| T |
9348969 |
gattcaatttcattagagtcgacttctaggtcttactgaatattttcatctggataaagagaaggctttggaggcatttcaatatcctcaatatctcctt |
9348870 |
T |
|
| Q |
210 |
cgagcatctctattactttgttcat |
234 |
Q |
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||||||||||||||||||| ||||| |
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| T |
9348869 |
cgagcatctctattactttattcat |
9348845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 9349909 - 9350033
Alignment:
| Q |
110 |
gattcaatttcattagacttgacttctaggtcttcctcaataatttcatttggacggaaagaaggttttggaggcatttcaatattctctatatttcctt |
209 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||| ||| |||||||||||| ||||| || |||||||||||||||||||| || |||||||||| |
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| T |
9349909 |
gattcaatttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttcctt |
9350008 |
T |
|
| Q |
210 |
cgagcatctctattactttgttcat |
234 |
Q |
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| ||||||||||| ||||||||||| |
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| T |
9350009 |
caagcatctctatcactttgttcat |
9350033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 9433199 - 9433136
Alignment:
| Q |
171 |
aaggttttggaggcatttcaatattctctatatttccttcgagcatctctattactttgttcat |
234 |
Q |
| |
|
|||| |||||||||||||||||||| || |||| |||||| |||||||||| |||||||||||| |
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| T |
9433199 |
aaggctttggaggcatttcaatattttcaatatctccttcaagcatctctactactttgttcat |
9433136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 9255387 - 9255324
Alignment:
| Q |
171 |
aaggttttggaggcatttcaatattctctatatttccttcgagcatctctattactttgttcat |
234 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||| |||||| ||||||||||| ||||| ||||| |
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| T |
9255387 |
aaggctttggaggcatttcaacattctcaatatctccttcaagcatctctatcactttattcat |
9255324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 9486551 - 9486488
Alignment:
| Q |
171 |
aaggttttggaggcatttcaatattctctatatttccttcgagcatctctattactttgttcat |
234 |
Q |
| |
|
|||| |||||||| ||||||||||| || |||| |||||| |||||||||| |||||||||||| |
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| T |
9486551 |
aaggctttggaggtatttcaatattttcaatatctccttcaagcatctctactactttgttcat |
9486488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 9454186 - 9454123
Alignment:
| Q |
171 |
aaggttttggaggcatttcaatattctctatatttccttcgagcatctctattactttgttcat |
234 |
Q |
| |
|
|||| |||||||||||||| ||||| || |||| |||||| |||||||||| |||||| ||||| |
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|
| T |
9454186 |
aaggctttggaggcatttccatattttcaatatctccttcaagcatctctactacttttttcat |
9454123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 8955769 - 8955826
Alignment:
| Q |
169 |
agaaggttttggaggcatttcaatattctctatatttccttcgagcatctctattact |
226 |
Q |
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||||||||||||||| |||||||||| || |||| |||||| ||||| ||||||||| |
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|
| T |
8955769 |
agaaggttttggaggaatttcaatatcttcaatatctccttcaagcatttctattact |
8955826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 15927616 - 15927492
Alignment:
| Q |
110 |
gattcaatttcattagacttgacttctaggtcttcctcaataatttcatttggacggaaagaaggttttggaggcatttcaatattctctatatttcctt |
209 |
Q |
| |
|
|||||| |||||||||| ||||| || |||||||||||||| |||||||||||| ||||| || |||||||||||||||| |||||| |||| ||||| |
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| T |
15927616 |
gattcagtttcattagagttgacgtcaaggtcttcctcaatcatttcatttggatacaaagagggctttggaggcatttcaacattctcaatatctcctt |
15927517 |
T |
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| Q |
210 |
cgagcatctctattactttgttcat |
234 |
Q |
| |
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| ||||||||||| ||| ||||||| |
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|
| T |
15927516 |
caagcatctctatcactctgttcat |
15927492 |
T |
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