View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10222_low_3 (Length: 395)
Name: NF10222_low_3
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10222_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 371
Target Start/End: Complemental strand, 33135443 - 33135085
Alignment:
| Q |
23 |
atatgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattca |
122 |
Q |
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| T |
33135443 |
atatgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattga |
33135344 |
T |
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| Q |
123 |
agaaggacctgagagcttccaaattatgccaaagaggatgttgtttcttgttcccactttcatttcttgtgtctcatacttcttgttgtacagatatgtt |
222 |
Q |
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| T |
33135343 |
agaaggacctgagagcttccaaattatgccaaagaggatgttatttcttgttcccactttcatttcttgtgtctcatatttcttgttgtacagatatgtt |
33135244 |
T |
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| Q |
223 |
agtggcttaattaaattaagttgatgacatgttattatgaatatgctagtgcttttgcacaccgagaaaatgtgtacttacta----------attagat |
312 |
Q |
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| T |
33135243 |
aatggcttaattaaattaagttgatgacatgttattatgaatatgctagtgcttttgcacaccgagaaaatgtgtacttactaattatatcatattagat |
33135144 |
T |
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| Q |
313 |
taattcatattgaatgaaaaatttcttggtatcaacagaaacaatttagtttgtttgtg |
371 |
Q |
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| T |
33135143 |
taattcatatttaatgaaaaaattcttggtatcaacagaaacaatttagtttgtttgtg |
33135085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 28457602 - 28457415
Alignment:
| Q |
25 |
atgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattcaag |
124 |
Q |
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| T |
28457602 |
atgagaagcatccaaaattgccgtgaggtagcttctgctctcatcataacccctaaaaaatgttgttccaaatttccaaggttggagtctatcattgaag |
28457503 |
T |
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| Q |
125 |
aaggacctgagagcttccaaattatgccaaagaggatgttgtttcttgttcccactttcatttcttgtgtctcatacttcttgttgtac |
213 |
Q |
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| T |
28457502 |
aaggatccgagagcttccaaactatgccaaagaagatgttgtttcttgttccc-gtttcatttcttgtgtcacgtacttcttgttgtac |
28457415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 39182394 - 39182237
Alignment:
| Q |
49 |
gaggtagctcctgctctcatcagaacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattcaagaaggacctgagagcttccaaatta |
148 |
Q |
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| T |
39182394 |
gaggtagcttttgctctcatcataaccc-taaaaaatgttgttctaaatttccaaggttggagcctatcattgaagaaggatccgagagcttccatacta |
39182296 |
T |
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| Q |
149 |
tgccaaagaggatgttgtttcttgttcccactttcatttcttgtgtctcatacttcttg |
207 |
Q |
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| T |
39182295 |
tgccaaagaagatgttgtttcttgttcccactttcatttcttgtgtcacatacttcttg |
39182237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 40029456 - 40029257
Alignment:
| Q |
26 |
tgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattcaaga |
125 |
Q |
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||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40029456 |
tgagaggcattcaaaattgtggtgaggtagctcctgctctgatcataacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattgaaga |
40029357 |
T |
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| Q |
126 |
aggacctgagagcttccaaattatgccaaagaggatgttgtttcttgttcccactttcatttcttgtgtctcatacttcttgttgtacagatatgttagt |
225 |
Q |
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| T |
40029356 |
aggacccaagagcttccaaactatgccaaagagaatgttgtttcttgttcccgctttcatttcttgtgtctcatacttcttgttgtacagatatgttagt |
40029257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 32354419 - 32354600
Alignment:
| Q |
25 |
atgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaacccctaaaaaatg---ttcttctaaatttccaaggttggagcctatcattc |
121 |
Q |
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|||| ||| |||||||||||||||||||| || ||||||||| ||| |||||||| |||||| ||||||||||||| |||||||||| ||||||||| |
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| T |
32354419 |
atgaaaggcatccaaaattgtggtgaggttgcacctgctctcctcataacccctagaaaatgctcttcttctaaattttcaaggttggaacctatcattg |
32354518 |
T |
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| Q |
122 |
aagaaggacctgagagcttccaaat---tatgccaaagaggatgttgtttcttgttcccactttcatttcttgtgtctcata |
200 |
Q |
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| T |
32354519 |
aagaaggagctgaaagtttacatattaatatgccaaagaagatgttgtttcttgctcctgttttcatttcttttctctcata |
32354600 |
T |
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