View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10222_low_7 (Length: 316)
Name: NF10222_low_7
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10222_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 46401260 - 46401068
Alignment:
| Q |
18 |
cacagactttctctgcaaaacagaggacaaataaattattaaattaaataaaactagatgtacttaagctttattaacagagcacaaaattgaatccata |
117 |
Q |
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| T |
46401260 |
cacagactttctctgcaaaacagaggacaaataaattattaaattaaataaaactagatgtacttaagctttattaacagagcacaaaattgaatccata |
46401161 |
T |
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| Q |
118 |
attcaaaaaactagaagcaaaataacaacgtactttgagcagtgcatcacttccagtaatgtaaccagaattctgcatcggaagtgagaattc |
210 |
Q |
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| T |
46401160 |
attcaaaaaactagaagcaaaataacaacgtactttgagcagtgcatcacttccagtaatgtaaccagaattctgcatcggaagtgagaattc |
46401068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 46401023 - 46400979
Alignment:
| Q |
255 |
cttagatttcagatgttatattcagtaatcactaaccacgagctt |
299 |
Q |
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| T |
46401023 |
cttagatttcagatgttatattcagtaatcactaaccacgagctt |
46400979 |
T |
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