View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10222_low_8 (Length: 313)

Name: NF10222_low_8
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10222_low_8
NF10222_low_8
[»] chr2 (1 HSPs)
chr2 (1-294)||(33759287-33759579)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 33759579 - 33759287
Alignment:
Q  1 cagagtgattatcaaattaccacataatatctatgttcaactctaaagactattttcttccgatgacctgaaatgcatctatgaattgcctttttcaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759579 cagagtgattatcaaattaccacataatatctatgttcaactctaaagactattttcttccgatgacctgaaatgcatctatgaattgcctttttcaaat 33759480  T
Q  101 agtgaatttgatcataagcatgagatctgaatcaaacattcgagttcgaccacatattgaagatagaatcaaactactaatatgataataacaaaaaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759479 agtgaatttgatcataagcatgagatctgaatcaaacattcgagttcgaccacatattgaagatagaatcaaactactaatatgataataacaaaaaagg 33759380  T
Q  201 catcttcatagtgaaatataattaaatgatttgatacaaacaaatcagatcatatttttatgagaaacaaaaatgatgaatgagagctactaaa 294  Q
     ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759379 -atcatcacagtgaaatataattaaatgatttgatacaaacaaatcagatcatatttttatgagaaacaaaaatgatgaatgagagctactaaa 33759287  T

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