View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10222_low_9 (Length: 290)
Name: NF10222_low_9
Description: NF10222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10222_low_9 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 38831525 - 38831241
Alignment:
| Q |
1 |
cccaagtctgacatatcaaattccttcatcatggactctttgaattcagacatcattttttcatcatctccggtataaattaaatcatcaacatataagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38831525 |
cccaagtctgacatatcaaattccttcatcatggactctttgaattcagacatcattttttcatcatctccggtataaattaaatcatcaacatataagc |
38831426 |
T |
|
| Q |
101 |
taataatcaaatgttttccttgtttgactttggtaaacaatgtttgctcactgtcctccttctcaaagccttcatttctaaagtatgattcaattcggct |
200 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38831425 |
taatgatcaaatgtttaccttgtttgactttggtaaacaaagtttgctcactgtcctccttctcaaagccttcatttctaaagtatgattcaattcggct |
38831326 |
T |
|
| Q |
201 |
gaaccatgctcgcggtgcctgcttaagtccgtacaaagctttgttaagcttatataccttatgctcctcattctttatttcataacccct |
290 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38831325 |
gaaccatgctcggggtgcctgc-----tccgtacaaagctttgttaagcttatataccttatgctcctcattctttatttcataacccct |
38831241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 655478 - 655557
Alignment:
| Q |
181 |
aagtatgattcaattcggctgaaccatgctcgcggtgcctgcttaagtccgtacaaagctttgttaagcttatatacctt |
260 |
Q |
| |
|
||||| ||||| || || ||| ||||||||||||| ||||| || |||||||| |||||||| || |||||||||||||| |
|
|
| T |
655478 |
aagtaggattctatgcgactgtaccatgctcgcggagcctgtttcagtccgtataaagctttatttagcttatatacctt |
655557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University