View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10223_high_1 (Length: 250)
Name: NF10223_high_1
Description: NF10223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10223_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 38519285 - 38519036
Alignment:
| Q |
1 |
agaggagaagcaaaggccaaaccacttaatatttaaaactttactggcatgaaaaatgaagccttaacaattaacaagcattcatttcattttatatcat |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38519285 |
agaggaaaagcaaaggccaaaccacttaatatttaaaactttactggcatgaaaaatgaagccttaacaattaacaagcattcatttcattttatatcat |
38519186 |
T |
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| Q |
101 |
gttcatgatctcgtctttcccttaccaggctaaaattcgcaaatgggtgatcgccaagtagctgacaaccagcataccgttgatcaacagctgccatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38519185 |
gttcatgatctcgtctttcccttaccaggctaaaattcgcaaatgggtgatcgccaagtagctgacaaccagcataccgttgatcaacagctgccatctt |
38519086 |
T |
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| Q |
201 |
ctcctcctcttcctcctccctcaaaagatgatatgatttcatgtgttatg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38519085 |
ctcctcctcttcctcctccctcaaaagatgatatgatttcatgtgttatg |
38519036 |
T |
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