View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10223_high_3 (Length: 230)
Name: NF10223_high_3
Description: NF10223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10223_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 22041196 - 22041091
Alignment:
| Q |
6 |
attaaatgcatgtgaaaaggatttcaaactatgatataagtgtatagtacatgaaataaaagattttgaaatagattaataaatataactatgagataag |
105 |
Q |
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| T |
22041196 |
attaaatgcatgtgaaaaggatttcaaactatgatataagtgtatagtacatgaaataaaagattttaaaatagattaataaatataactatgagataag |
22041097 |
T |
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| Q |
106 |
tgtata |
111 |
Q |
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|||||| |
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| T |
22041096 |
tgtata |
22041091 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 22041055 - 22040935
Alignment:
| Q |
109 |
ataaggtttggaaaaatacaatttatctgacatttataaagtgtaccatcaataaaaagggnnnnnnnnnnnggatgaaagaacatccaccatgtattat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22041055 |
ataaggtttggaaaaatacaatttatctgacatttataaaatgtatcatcaataaaaaggg-gaaaaaaataggatgaaagaacatccaccatgtattat |
22040957 |
T |
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| Q |
209 |
agtttgaagcaattgtagctac |
230 |
Q |
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| T |
22040956 |
aatttgaagcaattgtaactac |
22040935 |
T |
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