View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10223_low_1 (Length: 401)
Name: NF10223_low_1
Description: NF10223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10223_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 49627329 - 49627677
Alignment:
| Q |
18 |
aaactcaagtattaaaagaaaattctgcaccttcttataagcatatttaggctttcttttgnnnnnnnnaactcaatcctaatcgatggagaataagttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49627329 |
aaactcaagtattaaaagaaaattctgcaccttcttataagcatatttaggctttcttttgttttttttaactcaatcctaatcgatggagaataagttc |
49627428 |
T |
|
| Q |
118 |
atatacctaggcggggctatcgtttgcaagtaaaatttgggggaaaagatgaccattttggaagctggtaattaattggtttaagtcaaataaattatat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49627429 |
atatacctaggcggggctatcgtttgcaagtaaaatttgggggaaaagatgaccattttggaagctggtaattaattggtttaagtctaataaattatat |
49627528 |
T |
|
| Q |
218 |
gttatccgaataactttatcgcaaccatgagtaaaataaagatgatcgcaaccaaaaaatcaaaataagcaaaatcttgtgaagttacatgaactggttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49627529 |
gttatccgaataactttatcgcaaccatgagtaaaataaagatgatcgcaaccaaaaaatcaaaataagcaaaatcttgtgaagttacatgaactggttt |
49627628 |
T |
|
| Q |
318 |
tggatatattggaaatcaaaattatctgagggcaatgcacataaactgg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49627629 |
tggatatattggaaatcaaaattatctgagggcaatgcacataaactgg |
49627677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University