View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10223_low_2 (Length: 336)
Name: NF10223_low_2
Description: NF10223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10223_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 11506047 - 11506354
Alignment:
| Q |
20 |
tttttgtagtttgaatgtgtgtgataatttgtgtggaattgaaatcatgagaatttgaattgctaagnnnnnnngaagtgatttttatcagttaattttc |
119 |
Q |
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| T |
11506047 |
tttttgtagtttgaatgtgtgtgataatttgtgtggaattgaaatcatgagaatttgaattgctaagtttttttgaagtgatttttatcagttaattttc |
11506146 |
T |
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| Q |
120 |
tttcttggttttctgttcaatgattgtgaatctgaattctttacagttagtggataaagatccaggtaaagcaatttcccttttctgggctgctattaat |
219 |
Q |
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| T |
11506147 |
tttcttggttttctgttcaatgattgtgaatctgaattctttacagttagtggataaagatccaggtaaagcaatttcccttttctgggctgctattaat |
11506246 |
T |
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| Q |
220 |
gctggcgatcgcgttgagagtgccttgaaggatatggctttagttatgaagcaactgaaccggtctgatgaggcaatcgaagcgatcaagtctttccgcc |
319 |
Q |
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| T |
11506247 |
gctggcgatcgcgttgagagtgccttgaaggatatggctttagttatgaagcaactgaaccggtctgatgaggcaatcgaagcgatcaagtctttccgtc |
11506346 |
T |
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| Q |
320 |
atctctgc |
327 |
Q |
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|||||||| |
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| T |
11506347 |
atctctgc |
11506354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 327
Target Start/End: Original strand, 11498751 - 11498974
Alignment:
| Q |
110 |
gttaattttctttcttggttttctgttcaatgattgtgaatctgaattcttta------cagttagtggataaagatccaggtaaagcaatttccctttt |
203 |
Q |
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| T |
11498751 |
gttaattttgtttcttggttttttgttcaatgaatgtgaatctgaattctttaattatacagttgatagataaagatctaggtaaagcaatttccctttt |
11498850 |
T |
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| Q |
204 |
ctgggctgctattaatgctggcgatcgcgttgagagtgccttgaaggatatggctttagttatgaagcaactgaaccggtctgatgaggcaatcgaagcg |
303 |
Q |
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| T |
11498851 |
ctggagatccattaatgctggagatcgtgtcgagagtgccttgaaggatatggctttagttatgaagtaattgaaccggtctgacgaggcaatcgaagcg |
11498950 |
T |
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| Q |
304 |
atcaagtctttccgccatctctgc |
327 |
Q |
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|||| ||||||||| || |||||| |
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| T |
11498951 |
atcatgtctttccgtcacctctgc |
11498974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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