View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10223_low_3 (Length: 270)
Name: NF10223_low_3
Description: NF10223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10223_low_3 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 663356 - 663625
Alignment:
| Q |
1 |
acaatgtaatctgtatattgttttaggaggcaatagtaaactgataacaacacaacgactcactgtttgatcaccagaagcagtgaggatctgtgtatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
663356 |
acaatgtaatctgtatattgttttaggaggcaatagtaaactgagaacaacacaacaactcaccgtttgatcaccagaagcagtgaggatctgtgtatca |
663455 |
T |
|
| Q |
101 |
tcctgcaaacaaatgtaaaccaatttaagacactaacaaaacaaacaattcaggctgactacaatcaatcaaaatattaacaaaaacctatttataaagt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
663456 |
tcctgcatacaaatgtaaaccaatttaagacactaacaaaataaacaattcaggctgactacaatcgatcaaaatattaacaaaaacctatttataaagt |
663555 |
T |
|
| Q |
201 |
taatgaacatataattgcaaaacttgaaggctaccttaatccaattgacatcaaaaactgcattattatg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
663556 |
taatgaacatataattgcaaaacttgaaggctaccttaatccaattgacatcaaaaactgcattattatg |
663625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 908564 - 908309
Alignment:
| Q |
1 |
acaatgtaatctgtatattgttttaggaggcaatagtaaactgataacaacacaacgactcactgtttgatcaccagaagcagtgaggatctgtgtatca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
908564 |
acaatgtaatctatatattgttttagcagacaatagtaaactgataacaacacaacgactcactgtttaaccaccagaagcagtgaggatct-------- |
908473 |
T |
|
| Q |
101 |
tcctgcaaacaaatgtaaaccaatttaagacactaacaaaacaaacaattcaggctgactacaatcaatcaaaatattaacaaaaacctatttataaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| | |
|
|
| T |
908472 |
------aaacaaatgtaaaccaatttaagacactaacaaaataaacaattcaggctaattacaatcaatcaaaaaattaacaaaaacctatttgtaaatt |
908379 |
T |
|
| Q |
201 |
taatgaacatataattgcaaaacttgaaggctaccttaatccaattgacatcaaaaactgcattattatg |
270 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
908378 |
taatgaacatataattgcaaaaaatgaaggctaccttaatccaattgacgtcaaaaactgcattattatg |
908309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University