View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10223_low_6 (Length: 247)
Name: NF10223_low_6
Description: NF10223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10223_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38519021 - 38518789
Alignment:
| Q |
1 |
tttgcttccctgtttgccagccagagaacttcaagcaatagaccgttctccccacccttcccatcaaagtgagtaacttcaaatcaaatctttcaaattt |
100 |
Q |
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| T |
38519021 |
tttgcttccctgtttgccagccagagaacttcaagcaatagaccgttctccccacccttcccatcaaagtgagtaacttcaaatcaaatctttcaaattt |
38518922 |
T |
|
| Q |
101 |
ctgattttcgttcactgcattacaaattaagttacatgatagcttaa-nnnnnnnnatatttttcagacgagactatatatgtaaaagggtgtacttgag |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38518921 |
ctgattttggttcactgcattacaaattaagttacatgatagcttaatttttttttatatttttcagacgagactatatatgtaaaagggtgtacttgag |
38518822 |
T |
|
| Q |
200 |
accttttgtgtgatcaatggatgaatatgatgt |
232 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
38518821 |
accttttttgtgatcaatggatgaatatgatgt |
38518789 |
T |
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