View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10224_2 (Length: 445)
Name: NF10224_2
Description: NF10224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10224_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 421
Target Start/End: Complemental strand, 36404088 - 36403710
Alignment:
| Q |
30 |
atggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36404088 |
atggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaac |
36403989 |
T |
|
| Q |
130 |
cagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36403988 |
cagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttgt |
36403889 |
T |
|
| Q |
230 |
ttatcatcagaacaaggtttgctatgtctgatgatgtccatctcattgggcgctataacagcattggtgctatttctttgtgattgtggtaatgaaacat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36403888 |
ttatcatcagaacaaggtttgctatgtctgataattt-------------cgctataacagcattggtgctatttctttgtgattgtggaaatgaaacat |
36403802 |
T |
|
| Q |
330 |
cggtagaccaaatgggaatggtgctatggttatggtgaattactagatttccatttgggtcaatggataaaatcccagaagtgtcattgatg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36403801 |
cggtagaccaaatgggaatggtgctatggttgtggtgaattactagatttccatttgggtcaatggataaaatcccagaagtgtcattgatg |
36403710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 30 - 420
Target Start/End: Complemental strand, 36373413 - 36373039
Alignment:
| Q |
30 |
atggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaac |
129 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36373413 |
atggttgtacataaacaactgaggtttgacaatgctgttgaatttcactgtgaatgcaccatttccagggtcatcatctgtcttccaggattgaaggaac |
36373314 |
T |
|
| Q |
130 |
cagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
36373313 |
cagctttgattagtttttctattaaacccaatctttagatatggaagcaaggtgtctgttggatgatcaaagctttcccataatacagttttggtgttgt |
36373214 |
T |
|
| Q |
230 |
ttatcatcagaacaaggtttgctatgtctgatgatgtccatctcattgggcgctataacagcattggtgctatttctttgtgattgtggtaatgaaacat |
329 |
Q |
| |
|
|||||||||||||||||||||||| || ||| || | ||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36373213 |
ttatcatcagaacaaggtttgctacatccgataat-------------tgagctataa---ccctggtgctatttctttgtgattgtggtaatgaaacat |
36373130 |
T |
|
| Q |
330 |
cggtagaccaaatgggaatggtgctatggttatggtgaattactagatttccatttgggtcaatggataaaatcccagaagtgtcattgat |
420 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| | |||||||||| ||||||| || || |||| ||| |||||||| || ||||| |
|
|
| T |
36373129 |
cggtagaccaaatgggaatggtgctacggttgtggttgagtactagattttcatttggatcgattgatagaattccagaagtatcgttgat |
36373039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 30 - 421
Target Start/End: Complemental strand, 36397155 - 36396777
Alignment:
| Q |
30 |
atggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaac |
129 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
36397155 |
atggttgtacataaacaactgaggtatacctatgctgctgaatttcaccgtgaatgcaccttttccagggtcatcttctgtcttccaggattgaaggggc |
36397056 |
T |
|
| Q |
130 |
cagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttgt |
229 |
Q |
| |
|
|| ||||||||||||||||||| ||| || | | || |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36397055 |
caactttgattagtttttctatcaaaaccaaacctttgatatggaaggaaggtgtctgtgggatgatcaaagctttcccaaatgacagtttttgtgttgt |
36396956 |
T |
|
| Q |
230 |
ttatcatcagaacaaggtttgctatgtctgatgatgtccatctcattgggcgctataacagcattggtgctatttctttgtgattgtggtaatgaaacat |
329 |
Q |
| |
|
||||||||||||||| ||||||| |||||| | || | |||||||||||| | ||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
36396955 |
ttatcatcagaacaatgtttgctttgtctgttaattt-------------tgctataacagcactagtgatatttctttgtgatagtgttaatgaaacat |
36396869 |
T |
|
| Q |
330 |
cggtagaccaaatgggaatggtgctatggttatggtgaattactagatttccatttgggtcaatggataaaatcccagaagtgtcattgatg |
421 |
Q |
| |
|
|| |||||||| |||||||||||| |||| ||||| | | ||||||| |||||| ||| || |||| ||| |||||||||||||||||| |
|
|
| T |
36396868 |
tagtggaccaaattggaatggtgctaaggttgtggtggagttctagattcccattttggttgattgatagaattccagaagtgtcattgatg |
36396777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 30 - 411
Target Start/End: Complemental strand, 36387372 - 36387004
Alignment:
| Q |
30 |
atggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaac |
129 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36387372 |
atggttgtacattaacacttgaggtttgccaatggtgctgaatttcactgtgaatgcaccatttccagggtcatcatccgtcttccaggattgaaggaac |
36387273 |
T |
|
| Q |
130 |
cagctttgattagt-ttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttg |
228 |
Q |
| |
|
|||||||||||||| |||| ||| ||| || | | ||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
36387272 |
cagctttgattagttttttttatcaaaaccaagccttagatatggaagcaaggtgtctgttggatgatcaaagctttcccataatacagttttggtgttg |
36387173 |
T |
|
| Q |
229 |
tttatcatcagaacaaggtttgctatgtctgatgatgtccatctcattgggcgctataacagcattggtgctatttctttgtgattgtggtaatgaaaca |
328 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||| | | |||||||||||| | |||||||||||||||||||| || ||||||||| |
|
|
| T |
36387172 |
tttatcatcaaaacaaggtttgctatatccgatagt-------------tgagctataacagcactagtgctatttctttgtgattgcgggaatgaaaca |
36387086 |
T |
|
| Q |
329 |
tcggtagaccaaatgggaatggtgctatggttatggtgaattactagatttccatttgggtcaatggataaaatcccagaagt |
411 |
Q |
| |
|
| |||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||| || |||||||| || ||||| |
|
|
| T |
36387085 |
ttggtagaccaaatgggaatggtgcttaggttgtggtggagtactagatttccatttgggtcgat-gataaaattccggaagt |
36387004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 30 - 421
Target Start/End: Complemental strand, 36411402 - 36411027
Alignment:
| Q |
30 |
atggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaac |
129 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36411402 |
atggttgtacataaacaattgtggtttgccaatggtgctgaatttcaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggacc |
36411303 |
T |
|
| Q |
130 |
cagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttgt |
229 |
Q |
| |
|
|| ||||||||| ||||||||| ||| || |||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |||| || |
|
|
| T |
36411302 |
caactttgattaatttttctatcaaaaccaatcttttgatacggaagcattgtgtctgtgggatgatcaaagctttcccagatggcagtttcggtgtcgt |
36411203 |
T |
|
| Q |
230 |
ttatcatcagaacaaggtttgctatgtctgatgatgtccatctcattgggcgctataacagcattggtgctatttctttgtgattgtggtaatgaaacat |
329 |
Q |
| |
|
||| | |||||||||||||| |||| || || | | ||||||| |||||||| ||||||||||||| |||| ||||||||||| |
|
|
| T |
36411202 |
ttaacctcagaacaaggtttcctatatccaatagt-------------tgagctataa---cattggtgttatttctttgtgactgtgttaatgaaacat |
36411119 |
T |
|
| Q |
330 |
cggtagaccaaatgggaatggtgctatggttatggtgaattactagatttccatttgggtcaatggataaaatcccagaagtgtcattgatg |
421 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| | | ||||||| |||||| ||| || |||| ||| |||||||||||||||||| |
|
|
| T |
36411118 |
tggtagaccaaatgggaatggtgctaaggttgtggtggagttctagattcccattttggttgattgatagaattccagaagtgtcattgatg |
36411027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 30 - 421
Target Start/End: Complemental strand, 36416733 - 36416358
Alignment:
| Q |
30 |
atggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaac |
129 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36416733 |
atggttgtacataaacaattgtggtttgccaatggtgctgaatttcaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggacc |
36416634 |
T |
|
| Q |
130 |
cagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttgt |
229 |
Q |
| |
|
|| ||||||||| ||||||||| ||| || |||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |||| || |
|
|
| T |
36416633 |
caactttgattaatttttctatcaaaaccaatcttttgatacggaagcattgtgtctgtgggatgatcaaagctttcccagatggcagtttcggtgtcgt |
36416534 |
T |
|
| Q |
230 |
ttatcatcagaacaaggtttgctatgtctgatgatgtccatctcattgggcgctataacagcattggtgctatttctttgtgattgtggtaatgaaacat |
329 |
Q |
| |
|
||| | |||||||||||||| |||| || || | | ||||||| |||||||| ||||||||||||| |||| ||||||||||| |
|
|
| T |
36416533 |
ttaacctcagaacaaggtttcctatatccaatagt-------------tgagctataa---cattggtgttatttctttgtgactgtgttaatgaaacat |
36416450 |
T |
|
| Q |
330 |
cggtagaccaaatgggaatggtgctatggttatggtgaattactagatttccatttgggtcaatggataaaatcccagaagtgtcattgatg |
421 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| | | ||||||| |||||| ||| || |||| ||| |||||||||||||||||| |
|
|
| T |
36416449 |
tggtagaccaaatgggaatggtgctaaggttgtggtggagttctagattcccattttggttgattgatagaattccagaagtgtcattgatg |
36416358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 32 - 421
Target Start/End: Complemental strand, 36425566 - 36425193
Alignment:
| Q |
32 |
ggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaacca |
131 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||||| ||| |||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
36425566 |
ggttgtacataaacaactgcggtttgccaattgtgctgaatttcacggtgaacgcaccttttccagggtcatcgtcggtcttccatgattgaaggaacca |
36425467 |
T |
|
| Q |
132 |
gctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttgttt |
231 |
Q |
| |
|
||||||||| ||||||||| ||| || | ||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||| |||| |
|
|
| T |
36425466 |
actttgattaatttttctatcaaaaccaagctttatatatggaagcattgtgtctgtgggatgatccaagctttcccagatggcagtttcggtgtcgttt |
36425367 |
T |
|
| Q |
232 |
atcatcagaacaaggtttgctatgtctgatgatgtccatctcattgggcgctataacagcattggtgctatttctttgtgattgtggtaatgaaacatcg |
331 |
Q |
| |
|
| | |||||||||||||| |||| || || | | ||||||| |||||||| ||||||||||||| |||| ||||||||||| | |
|
|
| T |
36425366 |
aacctcagaacaaggtttcctatatccaatagt-------------tgagctataa---cattggtgttatttctttgtgaatgtgttaatgaaacattg |
36425283 |
T |
|
| Q |
332 |
gtagaccaaatgggaatggtgctatggttatggtgaattactagatttccatttgggtcaatggataaaatcccagaagtgtcattgatg |
421 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||| | | ||||||| ||||||||||| || |||| ||| |||||||||||||||||| |
|
|
| T |
36425282 |
gtagaccaaatgggaatggtgctaagtttgtggtggagttctagattcccatttgggtcgattgatagaattccagaagtgtcattgatg |
36425193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 36368797 - 36368573
Alignment:
| Q |
30 |
atggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaac |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||| || ||||| || ||||||||||||||||||||||||||||| ||||| || ||| |
|
|
| T |
36368797 |
atggttgtacataaacaactgaggttttccaatgctgctgaatttcaatgtgaatgcgccttttccagggtcatcatctgtcttccatgattggagaaac |
36368698 |
T |
|
| Q |
130 |
cagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttgt |
229 |
Q |
| |
|
|||||||||||||||||||||| ||| || | ||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||| | | | | |
|
|
| T |
36368697 |
cagctttgattagtttttctatcaaaaccaaccttgagatatggaagcaaggtatctgtaggatgatcaaaactttcccatatgacagttttggagcttt |
36368598 |
T |
|
| Q |
230 |
ttatcatcagaacaaggtttgctat |
254 |
Q |
| |
|
||| ||||| |||||||||| |||| |
|
|
| T |
36368597 |
ttagcatcaaaacaaggtttcctat |
36368573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 34 - 420
Target Start/End: Complemental strand, 36433421 - 36433051
Alignment:
| Q |
34 |
ttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaaccagc |
133 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||||||||||| || |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36433421 |
ttgtacataaaaagctgagttttaccaacggtgctgaatttcaacgtgaaggcaccttttccagggtcatcctctgtcttccaggattgaaggaaccagc |
36433322 |
T |
|
| Q |
134 |
tttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttttgtgttgtttat |
233 |
Q |
| |
|
|||||||||||||||||| ||| || | | || ||||||||||| | ||||| ||||||| ||||||||| ||||| ||||||||||| || |||||| |
|
|
| T |
36433321 |
tttgattagtttttctatcaaaaccaagcctttgatatggaagccaagtgtccgtgggataatcaaagctatcccatatgacagttttggttctgtttaa |
36433222 |
T |
|
| Q |
234 |
catcagaacaaggtttgctatgtctgatgatgtccatctcattgggcgctataacagcattggtgctatttctttgtgattgtggtaatgaaacatcggt |
333 |
Q |
| |
|
||||| ||||| |||| |||| || ||| | | ||||||| | | |||||||||| | |||||||| | | |||||||||||| |
|
|
| T |
36433221 |
catcaaaacaaagtttcctatatcagatagt-------------tgagctataa---cgtcggtgctatttatctgtgattgctggagtgaaacatcggt |
36433138 |
T |
|
| Q |
334 |
agaccaaatgggaatggtgctatggttatggtgaattactagatttccatttgggtcaatggataaaatcccagaagtgtcattgat |
420 |
Q |
| |
|
|||||||||||||||||||||| |||| | || | ||||||||||||||||||| || |||| ||| ||||||||||||||||| |
|
|
| T |
36433137 |
agaccaaatgggaatggtgctaaggttgttgttgagaactagatttccatttgggttgattgatagaattccagaagtgtcattgat |
36433051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 420
Target Start/End: Complemental strand, 36368550 - 36368423
Alignment:
| Q |
293 |
ttggtgctatttctttgtgattgtggtaatgaaacatcggtagaccaaatgggaatggtgctatggttatggtgaattactagatttccatttgggtcaa |
392 |
Q |
| |
|
|||||||||||| | ||||| || ||| ||||||| |||||||||||||||||||| ||||| |||| |||| | ||||||||||||||| | || | |
|
|
| T |
36368550 |
ttggtgctatttatctgtgactgcagtagtgaaacagcggtagaccaaatgggaatgttgctaaggttgtggttgagaactagatttccatttcgatcga |
36368451 |
T |
|
| Q |
393 |
tggataaaatcccagaagtgtcattgat |
420 |
Q |
| |
|
| |||| ||| ||||||||||||||||| |
|
|
| T |
36368450 |
ttgatagaattccagaagtgtcattgat |
36368423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 34712387 - 34712339
Alignment:
| Q |
372 |
ctagatttccatttgggtcaatggataaaatcccagaagtgtcattgat |
420 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
34712387 |
ctagatttccattttggtcaattgatagaattccagaagtgtcattgat |
34712339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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