View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10224_5 (Length: 330)

Name: NF10224_5
Description: NF10224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10224_5
NF10224_5
[»] chr8 (18 HSPs)
chr8 (3-144)||(32850236-32850377)
chr8 (155-301)||(13831874-13832025)
chr8 (155-301)||(34604779-34604930)
chr8 (155-301)||(35583881-35584032)
chr8 (155-301)||(29690434-29690585)
chr8 (155-300)||(45372704-45372854)
chr8 (155-301)||(7548496-7548648)
chr8 (170-301)||(44579907-44580043)
chr8 (155-301)||(43932048-43932199)
chr8 (169-301)||(43292566-43292703)
chr8 (215-301)||(34745255-34745341)
chr8 (155-301)||(43409833-43409984)
chr8 (166-212)||(8242148-8242194)
chr8 (215-291)||(9633089-9633165)
chr8 (155-203)||(34745256-34745304)
chr8 (155-203)||(43292567-43292615)
chr8 (252-301)||(43932047-43932096)
chr8 (233-301)||(35794608-35794676)
[»] chr4 (33 HSPs)
chr4 (158-301)||(54864062-54864210)
chr4 (158-301)||(43141768-43141916)
chr4 (155-301)||(37895254-37895405)
chr4 (169-302)||(35877311-35877449)
chr4 (155-301)||(33622879-33623030)
chr4 (155-301)||(36196364-36196515)
chr4 (153-294)||(25874704-25874851)
chr4 (170-295)||(50511259-50511389)
chr4 (191-300)||(8347527-8347641)
chr4 (155-299)||(43556690-43556840)
chr4 (155-301)||(32193474-32193625)
chr4 (155-300)||(33615778-33615928)
chr4 (170-294)||(19350626-19350753)
chr4 (170-295)||(35929014-35929143)
chr4 (215-293)||(50511491-50511569)
chr4 (215-300)||(24100758-24100843)
chr4 (216-285)||(52278032-52278101)
chr4 (155-301)||(25756711-25756862)
chr4 (155-301)||(29686399-29686550)
chr4 (155-289)||(52136698-52136837)
chr4 (170-266)||(40592726-40592827)
chr4 (170-292)||(52966409-52966536)
chr4 (156-297)||(56491072-56491218)
chr4 (236-301)||(53225729-53225794)
chr4 (216-300)||(42159972-42160056)
chr4 (170-300)||(31853066-31853201)
chr4 (259-300)||(17316588-17316629)
chr4 (216-285)||(22210803-22210872)
chr4 (252-301)||(29686398-29686447)
chr4 (252-301)||(48361050-48361099)
chr4 (252-300)||(4418198-4418246)
chr4 (252-300)||(44111846-44111894)
chr4 (252-300)||(52136698-52136746)
[»] chr5 (26 HSPs)
chr5 (158-301)||(20502085-20502233)
chr5 (155-300)||(38978741-38978891)
chr5 (155-301)||(29451891-29452041)
chr5 (155-301)||(33247291-33247441)
chr5 (155-295)||(29874316-29874461)
chr5 (155-301)||(7537019-7537170)
chr5 (169-298)||(9630248-9630382)
chr5 (170-301)||(35204922-35205057)
chr5 (170-301)||(35212102-35212237)
chr5 (155-300)||(5355550-5355700)
chr5 (215-300)||(32455203-32455288)
chr5 (155-290)||(24173419-24173559)
chr5 (169-300)||(27600758-27600893)
chr5 (155-300)||(29002741-29002891)
chr5 (215-301)||(19211278-19211364)
chr5 (170-296)||(33970671-33970802)
chr5 (155-208)||(30132884-30132937)
chr5 (154-213)||(8680632-8680691)
chr5 (252-302)||(73781-73831)
chr5 (241-303)||(13789822-13789884)
chr5 (260-301)||(5355660-5355701)
chr5 (256-301)||(30132840-30132885)
chr5 (252-300)||(8680642-8680690)
chr5 (255-295)||(13278990-13279030)
chr5 (241-301)||(22731348-22731408)
chr5 (252-300)||(29031137-29031185)
[»] chr7 (30 HSPs)
chr7 (155-301)||(41487789-41487940)
chr7 (216-301)||(12806906-12806991)
chr7 (155-300)||(27320293-27320443)
chr7 (169-301)||(41395675-41395812)
chr7 (170-297)||(45123247-45123379)
chr7 (215-301)||(47484085-47484171)
chr7 (216-300)||(40198603-40198687)
chr7 (155-300)||(18064721-18064871)
chr7 (170-275)||(47280188-47280297)
chr7 (155-300)||(22618162-22618312)
chr7 (155-300)||(47612289-47612439)
chr7 (170-293)||(37006470-37006599)
chr7 (155-297)||(24164518-24164665)
chr7 (215-301)||(45025592-45025678)
chr7 (215-300)||(33901037-33901122)
chr7 (215-300)||(41088851-41088936)
chr7 (169-300)||(10674122-10674258)
chr7 (233-300)||(10007658-10007725)
chr7 (215-297)||(13860281-13860363)
chr7 (155-213)||(24932460-24932518)
chr7 (252-301)||(2523871-2523920)
chr7 (215-268)||(7456483-7456536)
chr7 (236-301)||(24932381-24932446)
chr7 (155-239)||(40234765-40234854)
chr7 (170-301)||(28248429-28248569)
chr7 (155-210)||(41088851-41088906)
chr7 (215-301)||(14543266-14543352)
chr7 (252-301)||(34840608-34840657)
chr7 (252-300)||(13807241-13807289)
chr7 (252-300)||(40234765-40234813)
[»] chr3 (30 HSPs)
chr3 (169-301)||(45113747-45113884)
chr3 (170-300)||(27302093-27302228)
chr3 (155-300)||(53284315-53284465)
chr3 (155-288)||(43901592-43901730)
chr3 (169-300)||(16123756-16123891)
chr3 (155-301)||(50659948-50660088)
chr3 (169-301)||(50100207-50100345)
chr3 (177-293)||(21944295-21944416)
chr3 (155-301)||(31376174-31376325)
chr3 (215-300)||(46220365-46220450)
chr3 (154-301)||(39616909-39617061)
chr3 (155-301)||(53703728-53703880)
chr3 (215-300)||(24489377-24489461)
chr3 (215-301)||(19227372-19227458)
chr3 (215-301)||(44118247-44118333)
chr3 (155-300)||(48346449-48346599)
chr3 (157-213)||(2544550-2544606)
chr3 (155-203)||(31376276-31376324)
chr3 (155-203)||(39617012-39617060)
chr3 (252-301)||(21662884-21662933)
chr3 (215-300)||(48643668-48643753)
chr3 (154-210)||(2544435-2544491)
chr3 (155-203)||(53703729-53703777)
chr3 (219-266)||(27363229-27363276)
chr3 (155-210)||(48643698-48643753)
chr3 (241-300)||(53441997-53442056)
chr3 (252-301)||(31376173-31376222)
chr3 (255-300)||(51516957-51517002)
chr3 (252-300)||(2544436-2544484)
chr3 (155-203)||(19227409-19227457)
[»] chr6 (12 HSPs)
chr6 (154-301)||(30438741-30438893)
chr6 (155-301)||(28605569-28605720)
chr6 (191-294)||(12217526-12217635)
chr6 (215-300)||(10145279-10145364)
chr6 (216-297)||(12605675-12605756)
chr6 (155-301)||(2913331-2913482)
chr6 (215-285)||(9343134-9343204)
chr6 (215-280)||(3847472-3847537)
chr6 (252-300)||(23916228-23916276)
chr6 (215-301)||(33127850-33127939)
chr6 (233-301)||(2230431-2230499)
chr6 (154-206)||(23916225-23916277)
[»] chr2 (16 HSPs)
chr2 (155-301)||(36103392-36103543)
chr2 (169-301)||(15239705-15239842)
chr2 (178-301)||(28143767-28143895)
chr2 (160-301)||(40534517-40534663)
chr2 (169-301)||(45076340-45076477)
chr2 (182-292)||(23464522-23464638)
chr2 (170-285)||(27306725-27306843)
chr2 (154-300)||(27311575-27311726)
chr2 (155-301)||(25795237-25795388)
chr2 (216-285)||(9373459-9373528)
chr2 (236-301)||(12873721-12873786)
chr2 (236-280)||(28249018-28249062)
chr2 (155-210)||(25795332-25795387)
chr2 (244-301)||(13775804-13775861)
chr2 (252-301)||(41153212-41153261)
chr2 (233-300)||(7943521-7943589)
[»] chr1 (24 HSPs)
chr1 (155-300)||(52279233-52279383)
chr1 (160-300)||(45977098-45977243)
chr1 (155-298)||(13320302-13320450)
chr1 (158-301)||(15699462-15699610)
chr1 (155-267)||(13770741-13770858)
chr1 (169-268)||(44224300-44224404)
chr1 (177-268)||(29438169-29438265)
chr1 (155-297)||(27687840-27687987)
chr1 (155-301)||(51590428-51590579)
chr1 (169-301)||(19998409-19998546)
chr1 (215-278)||(32837657-32837720)
chr1 (252-301)||(51590531-51590580)
chr1 (169-300)||(31050249-31050385)
chr1 (227-301)||(25238649-25238723)
chr1 (169-200)||(13321727-13321758)
chr1 (215-297)||(13321716-13321798)
chr1 (259-301)||(48565635-48565677)
chr1 (252-301)||(18038789-18038838)
chr1 (252-301)||(26924211-26924260)
chr1 (252-301)||(50155399-50155448)
chr1 (161-202)||(52030963-52031004)
chr1 (252-300)||(29256699-29256747)
chr1 (169-213)||(34174899-34174943)
chr1 (155-203)||(51590429-51590477)
[»] scaffold0200 (1 HSPs)
scaffold0200 (160-302)||(25618-25766)
[»] scaffold0059 (1 HSPs)
scaffold0059 (155-302)||(26585-26737)
[»] scaffold0767 (2 HSPs)
scaffold0767 (169-301)||(3807-3944)
scaffold0767 (155-205)||(3808-3858)
[»] scaffold0023 (1 HSPs)
scaffold0023 (155-301)||(112822-112973)
[»] scaffold0110 (1 HSPs)
scaffold0110 (215-301)||(40255-40341)
[»] scaffold0176 (1 HSPs)
scaffold0176 (216-288)||(19308-19377)
[»] scaffold0015 (1 HSPs)
scaffold0015 (215-300)||(17384-17469)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 32850236 - 32850377
Alignment:
Q  3 cttctttggagttggactctaccatgctttttcttattcaaaatgaataagtttggatgggaaccacaaaacagatgtgctagggtttgcgttaaaaaga 102  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32850236 cttctttggagttggactctgccatgctttttcttattcaaaatgaataagtttggatgggaaccacaaaacagatgtgctagggtttgcgttaaaaaga 32850335  T
Q  103 gatcgagagaaaccctaacccgtttcctttctttctttgttt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32850336 gatcgagagaaaccctaacccgtttcctttctttctttgttt 32850377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 13831874 - 13832025
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattatt 249  Q
    |||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||    
T  13831874 tactcccttcggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatatagtctatatttacaataagatacattaattatt 13831973  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  13831974 ctatgaacctaaaaagtcaactttttcttataataaggaccggagggagtat 13832025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 34604930 - 34604779
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||||||||||| | |||||||||||||||||||||||      ||||||||||||||||||||||||| ||| |||||    
T  34604930 tactccctccggtccttattataagaaacaattgatttttttggttcattgtataagtgatgtatctagtctatatttacaataagatacattatttatt 34604831  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  34604830 ctatgaacctaaaaagtcaactttttcttataataaggaccggagggagtat 34604779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 35584032 - 35583881
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||      ||| ||||||||||||||||||||| |||||||||    
T  35584032 tactccctccggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatctaatctatatttacaataagatacattaattatt 35583933  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||| |||||| ||||| |||||||||| |||||||| |||||||||||    
T  35583932 ctatgaacctaaaaggtcatatttttcttataataaggactggagggagtat 35583881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 29690585 - 29690434
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||      |||||||||||||| |||||||||| |||||||||    
T  29690585 tacttcctccggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatctagtctatatttataataagatacattaattatt 29690486  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||| |||||||||||  |||||||||| ||||||||  ||||||||||    
T  29690485 ctatgaacctaaaaagtcagttttttcttataataaggactagagggagtat 29690434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 45372854 - 45372704
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||| ||||||| ||||||||| |||| ||| ||||||      ||||||||||||| ||||||||||| |||||||||    
T  45372854 tactccctccggtccttattataagtaacaattgacttttttgattcaatgtgtaagtgatgtatctagtctatattttcaataagatacattaattatt 45372755  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
     |||||| ||||||||||| |||||||||||  ||||||||||||||||||    
T  45372754 ctatgaacctaaaaagtcaactttttcttatattaaggaccggagggagta 45372704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 7548496 - 7548648
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||||||||||||| |||||||||||||||| ||||||       ||| |||||||||||||||||| | |||||||||    
T  7548496 tactccctccggtccttattataagaaacaattaatttttttggttcattgtgtaagtgatgtatttagactatatttacaataagatgcattaattatt 7548595  T
Q  250 ttatgaatctaaaaag-tcatctttttcttattataaggaccggagggagtat 301  Q
     |||||| |||||||  ||| ||||||||||| ||||||||||||||||||||    
T  7548596 ctatgaacctaaaaaaatcaactttttcttataataaggaccggagggagtat 7548648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 44579907 - 44580043
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| ||||||||||||||||||||| || |||||||||||       ||||||||||||||||||||||||| ||||||||| ||||||  ||||||    
T  44579907 ttattataagaaacaattaacttttttgatttattgtataagtaatatatctagtctatatttacaataagatacattaattattctatgaacttaaaaa 44580006  T
Q  265 gtcatctttttcttattataaggaccggagggagtat 301  Q
    |||| ||||||||||| |||||||| | |||||||||    
T  44580007 gtcaactttttcttataataaggactgaagggagtat 44580043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 43932048 - 43932199
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||||||||||| ||||||| ||||||||||| || ||      ||| |||||||||| || ||||||| |||||||||    
T  43932048 tactccctccggtccttattataagaaacaattgactttttaggttcattgtacaaatgatgtatctaatctatatttataacaagatacattaattatt 43932147  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
      |||||||||||||||||  | |||||||| ||||||||||||||||||||    
T  43932148 caatgaatctaaaaagtcaattgtttcttataataaggaccggagggagtat 43932199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 43292703 - 43292566
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| |||||||| || ||||||| |||||||| | ||||||      |||||||||||||| || ||||||| ||||||||| |||||| | ||||    
T  43292703 cttattataagaaacatttgactttttaggttcattatgtaagtgatgtatctagtctatatttataacaagatacattaattattctatgaaccaaaaa 43292604  T
Q  264 agtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||  | |||||||| ||||||||||||||||||||    
T  43292603 agtcaattgtttcttataataaggaccggagggagtat 43292566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 34745341 - 34745255
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||||| || ||||||| ||||||||| |||||| | |||||||||  | |||||||| ||||||||||||||||||||    
T  34745341 ctagtctatatttataacaagatacattaattattctatgaaccaaaaaagtcaattgtttcttataataaggaccggagggagtat 34745255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 43409833 - 43409984
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||| | ||||| ||||||| ||||||||||||||||       |||||||||||||| ||  || ||| |||||||||    
T  43409833 tactccctccggtccttattataagcagcaattgactttttaggttcattgtataagtaatgtatctagtctatatttataacgaggtacattaattatt 43409932  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
      ||||| | |||||||||| | || || || ||||||||||||||||||||    
T  43409933 caatgaaccgaaaaagtcatttgttgctaataataaggaccggagggagtat 43409984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 8242148 - 8242194
Alignment:
Q  166 gttcttattacaagaaacaattaacttttttggttcattgtataagt 212  Q
    |||||||||| |||||||| || ||||||||||||||||||||||||    
T  8242148 gttcttattataagaaacagttgacttttttggttcattgtataagt 8242194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 9633165 - 9633089
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccg 291  Q
    |||||||||||||| || ||||||| ||||||||   |||||||||||| ||||  | |||||||| ||||||||||    
T  9633165 ctagtctatatttataacaagatacattaattatacaatgaatctaaaacgtcaattgtttcttataataaggaccg 9633089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 34745256 - 34745304
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcat 203  Q
    |||||||||| || ||||||| ||||||||||| |||||||||||||||    
T  34745256 tactccctccggtccttattataagaaacaattgacttttttggttcat 34745304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 43292567 - 43292615
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcat 203  Q
    |||||||||| || ||||||| ||||||||||| |||||||||||||||    
T  43292567 tactccctccggtccttattataagaaacaattgacttttttggttcat 43292615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 43932096 - 43932047
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||| |||||||||||  | |||||||| ||||||||||||||||||||    
T  43932096 atgaacctaaaaagtcaattgtttcttataataaggaccggagggagtat 43932047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 35794608 - 35794676
Alignment:
Q  233 aagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||| ||||||| |  ||||||||||||||| |    |||||||| ||||||||||||||||||||    
T  35794608 aagatacattaattactcaatgaatctaaaaagtaaaaagtttcttataataaggaccggagggagtat 35794676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 158 - 301
Target Start/End: Complemental strand, 54864210 - 54864062
Alignment:
Q  158 tccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatttta 252  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||| ||||||||| ||    
T  54864210 tccctccggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatctagtctatatttacaataagatacattaattattcta 54864111  T
Q  253 tgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  54864110 tgaacctaaaaagtcaactttttcttataataaggaccggagggagtat 54864062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 158 - 301
Target Start/End: Original strand, 43141768 - 43141916
Alignment:
Q  158 tccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatttta 252  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||||||||||      ||| ||||||||||||||||||||| ||||||||| ||    
T  43141768 tccctccggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatctaatctatatttacaataagatacattaattattcta 43141867  T
Q  253 tgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||| ||||||||||| ||||||||||| |||| ||||||||| |||||    
T  43141868 tgaacctaaaaagtcaactttttcttataataaagaccggaggaagtat 43141916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 37895254 - 37895405
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||||||| || | |||||||||||||||||||||||      |||||||| ||||||||||| |||| |||||||||    
T  37895254 tactccctccggtccttattataagaaacagttgatttttttggttcattgtataagtgatgtatctagtctacatttacaataaaatacattaattatt 37895353  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  37895354 ctatgaatctaaaaagtcaactttttcttataataaggaccggagggagtat 37895405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 169 - 302
Target Start/End: Complemental strand, 35877449 - 35877311
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||       ||| |||||||||||||||||||| ||||||||| |||||||||||||    
T  35877449 cttattataagaaacaattaatttttttggttcattgtgtaagtgatgtatttagactatatttacaataagatacattaattattctatgaatctaaaa 35877350  T
Q  264 agtcatctttttcttattataaggaccggagggagtatc 302  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  35877349 agtcaactttttcttataataaggaccggagggagtatc 35877311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 33622879 - 33623030
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||      ||||| ||||||||||||||||||| |||||||||    
T  33622879 tactccctccggtccttattataagaaacaattaacttttttggttcattgtataggtgatgtatctagtttatatttacaataagatacattaattatt 33622978  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     ||||||  ||||||||||  |||||||||| ||| ||| ||||||||||||    
T  33622979 ctatgaacgtaaaaagtcaattttttcttataatagggatcggagggagtat 33623030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 36196364 - 36196515
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||||||||||| | |||||||||||||| ||||||||       ||||||| |||||||||||||||| |||||||||    
T  36196364 tactccctccggtccttattataagaaacaattgatttttttggttcattttataagtgatgtatatagtctacatttacaataagatacattaattatt 36196463  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||||||||||| |||  |||||||||| ||||||||||||||||||||    
T  36196464 ctatgaatctaaaaaatcaattttttcttataataaggaccggagggagtat 36196515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 294
Target Start/End: Complemental strand, 25874851 - 25874704
Alignment:
Q  153 gctactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaatta 247  Q
    |||||||||||| || ||||||| |||||| |||||| |||||||||||||||||||||||      |||||||||||||||||||| |||| |||||||    
T  25874851 gctactccctccggtccttattataagaaagaattaatttttttggttcattgtataagtgatgtatctagtctatatttacaataaaatacattaatta 25874752  T
Q  248 ttttatgaatctaaaaagtc-atctttttcttattataaggaccggag 294  Q
    || |||||||||||||| || || ||||| |||| |||||||||||||    
T  25874751 ttctatgaatctaaaaaatctattttttttttataataaggaccggag 25874704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 170 - 295
Target Start/End: Original strand, 50511259 - 50511389
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| |||||||||||||||||||||||||||||| ||||||       ||| |||||||||||||||||||| ||||||||| ||| |||||||| |    
T  50511259 ttattataagaaacaattaacttttttggttcattgtgtaagtgatgtatttagactatatttacaataagatacattaattattctataaatctaaaga 50511358  T
Q  265 gtcatctttttcttattataaggaccggagg 295  Q
    |||| ||||||||||| ||||||||||||||    
T  50511359 gtcaactttttcttataataaggaccggagg 50511389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 300
Target Start/End: Original strand, 8347527 - 8347641
Alignment:
Q  191 ttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataa 285  Q
    |||||||||||||||||||| ||      ||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||| ||||||||||| ||||    
T  8347527 ttttttggttcattgtataaatgatgtatctagtctatatttacaataagatacattatttattctatgaacctaaaaagtcaactttttcttataataa 8347626  T
Q  286 ggaccggagggagta 300  Q
    |||||||||||||||    
T  8347627 ggaccggagggagta 8347641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 155 - 299
Target Start/End: Original strand, 43556690 - 43556840
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||||||||||| | |||||| |||| |||| |||||| |     ||||||| |||||||||||||||| |||||||||    
T  43556690 tactccctccggtccttattataagaaacaattgatttttttagttcgttgtgtaagtgacgtatctagtctacatttacaataagatacattaattatt 43556789  T
Q  250 ttatgaatctaaaaagtc-atctttttcttattataaggaccggagggagt 299  Q
     |||||| ||||||| || || |||||||||| ||||||||||||||||||    
T  43556790 ctatgaacctaaaaaatcaatttttttcttataataaggaccggagggagt 43556840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 32193474 - 32193625
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||||||||||| |||||||||||||||| | |||||       |||||||||||||  |||||| ||| |||||||||    
T  32193474 tactccctccggtccttattataagaaacaattgacttttttggttcattatgtaagtaatgtatctagtctatatttctaataaggtacattaattatt 32193573  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     ||||||  |||||| ||| | ||||||||| |||||||||||||| |||||    
T  32193574 ctatgaacttaaaaaatcaacgttttcttataataaggaccggaggaagtat 32193625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 33615928 - 33615778
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| || |||||||| | ||||| | |||||||| ||||||      ||||||||||||||||||||||||| ||||||| |    
T  33615928 tactccctccggtccttattataaaaaacaattgaatttttagattcattgtgtaagtgatgtatctagtctatatttacaataagatacattaattact 33615829  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
      ||||||||||||| |||    |||||||| |||||||||||||||||||    
T  33615828 caatgaatctaaaaaatcaaaagtttcttataataaggaccggagggagta 33615778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 19350626 - 19350753
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtg----gctagtctatatttacaataagatacgttaattattttatgaatctaaaaag 265  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||     ||||||| |||||| ||||||| || |||| |||| ||| || ||||||||    
T  19350626 ttattataagaaacaattaatttttttggttcattgtgtaagtgagtatctagtctttatttataataaga-acattaagtattctataaacctaaaaag 19350724  T
Q  266 tcatctttttcttattataaggaccggag 294  Q
    ||| |||||| || | |||||||||||||    
T  19350725 tcaacttttttttttaataaggaccggag 19350753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 35929143 - 35929014
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| ||||||||||| | |||||||||||||||| ||||||      ||| |||||||||| |||||||||| ||||||||| ||| || |||||||    
T  35929143 ttattataagaaacaattga-ttttttggttcattgtgtaagtgatgtatctaatctatatttataataagatacattaattattctataaacctaaaaa 35929045  T
Q  265 gtcatctttttcttattataaggaccggagg 295  Q
     ||| ||||||||||| |||| ||| |||||    
T  35929044 atcaactttttcttataataaagacgggagg 35929014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 50511491 - 50511569
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccgga 293  Q
    ||||| ||||||||||||||||||| ||||||||| |||||| ||||| ||||| ||||||||||| || | |||||||    
T  50511491 ctagtttatatttacaataagatacattaattattctatgaacctaaagagtcaactttttcttataatgaagaccgga 50511569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 24100843 - 24100758
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||||||||| || ||||||| |||||||||  ||||||||||||||| |  | |||||||| ||||||| |||||||||||    
T  24100843 ctagtctatatttataacaagatacattaattattcaatgaatctaaaaagttaattatttcttataataaggatcggagggagta 24100758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 52278032 - 52278101
Alignment:
Q  216 tagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataa 285  Q
    |||||||||||||||||||||||  ||||||||| ||| ||||||||||||||  |||||||||| ||||    
T  52278032 tagtctatatttacaataagatatattaattattctataaatctaaaaagtcaattttttcttataataa 52278101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 25756711 - 25756862
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||||| |||| ||||||| |||||| ||| ||||||      ||||||| |||||| ||  |||||| ||||||||     
T  25756711 tactccctccggtccttattataagaaataattgactttttaggttcactgtgtaagtgatgtatctagtctctatttataacgagatacattaattatc 25756810  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
      |||||  ||||||||||  | |||||||| ||||||||||||||||||||    
T  25756811 caatgaacataaaaagtcaattgtttcttataataaggaccggagggagtat 25756862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 29686399 - 29686550
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||||||| || ||||||| |||||||||| ||| ||      |||||||||||||| || || |||| ||||||||     
T  29686399 tactccctccggtccttattataagaaacatttgactttttaggttcattgtgtaaatgatgtatctagtctatatttataacaatatacattaattata 29686498  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
      |||||| |||||| | |  | |||||||| ||||||||||||||||||||    
T  29686499 caatgaatttaaaaaattaattgtttcttataataaggaccggagggagtat 29686550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 289
Target Start/End: Original strand, 52136698 - 52136837
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtg-----gctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||||| |||||||||||| |||||||||| ||||||       ||||||||||||| || ||||||| |||||||||    
T  52136698 tactccctccggtccttattataagaaaaaattaactttttaggttcattgtgtaagtgatgtatttagtctatatttataacaagatacattaattatt 52136797  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggac 289  Q
     ||||||   ||||| |||  | |||||||| ||||||||    
T  52136798 ctatgaactaaaaaaatcaattgtttcttataataaggac 52136837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 40592726 - 40592827
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtg-----gctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| ||||||||||||||||||| | |||||||||||||||      ||||| |||||||| || ||||||| ||||||||| ||| || |||||||    
T  40592726 ttattataagaaacaattaactttttggattcattgtataagtgatgtatctagtttatatttataacaagatacattaattattctataaacctaaaaa 40592825  T
Q  265 gt 266  Q
    ||    
T  40592826 gt 40592827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 292
Target Start/End: Original strand, 52966409 - 52966536
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| |||||| | || |||||||  ||||||||||||||||      |||||||||||||| || ||||| | ||||||||| |||||| | |||||    
T  52966409 ttattataagaaaaatttgactttttaagttcattgtataagtgatgtatctagtctatatttataacaagatgcattaattattctatgaaccaaaaaa 52966508  T
Q  265 gtcatctttttcttattataaggaccgg 292  Q
    ||||  | |||||||| |||||||||||    
T  52966509 gtcaattgtttcttataataaggaccgg 52966536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 297
Target Start/End: Original strand, 56491072 - 56491218
Alignment:
Q  156 actccctcccgttcttattacaagaaacaattaacttttttggttcattgtataa-----gtggctagtctatatttacaataagatacgttaattattt 250  Q
    ||||||||| || ||||||| ||| | ||||| ||||||| ||||||||||||||     ||  |||||||||||||| ||  || ||| |||||||||     
T  56491072 actccctccggtccttattataagcagcaattgactttttaggttcattgtataagtaatgtatctagtctatatttataacgaggtacattaattattc 56491171  T
Q  251 tatgaatctaaaaagtcatctttttcttattataaggaccggaggga 297  Q
     |||||  ||||||||||| | || ||||| ||||||||| ||||||    
T  56491172 aatgaacttaaaaagtcatttgttgcttataataaggacccgaggga 56491218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 53225729 - 53225794
Alignment:
Q  236 atacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||| |||||||||  |||||||||||||||||  |||||||||| |  |||||||||||||||||    
T  53225729 atacattaattattcaatgaatctaaaaagtcaattttttcttataaataggaccggagggagtat 53225794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 42160056 - 42159972
Alignment:
Q  216 tagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||||||||| || ||||||| ||||||||| ||||||   ||||| |||  | |||||||| ||||||||||||| |||||    
T  42160056 tagtctatatttataacaagatacattaattattctatgaacaaaaaaaatcaattatttcttataataaggaccggagtgagta 42159972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 300
Target Start/End: Complemental strand, 31853201 - 31853066
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| |||||| | || ||||||| |||||||||| ||||||      |||||||||||||| || ||||||| ||||||||| |||||||  |||||    
T  31853201 ttattataagaaaaatttgactttttaggttcattgtgtaagtgatgtatctagtctatatttataacaagatacattaattattctatgaattaaaaaa 31853102  T
Q  265 gtcatctttttcttattataaggaccggagggagta 300  Q
     |||  | |||||||| |||| || || ||||||||    
T  31853101 atcaattatttcttataataaagatcgaagggagta 31853066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 17316588 - 17316629
Alignment:
Q  259 taaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||| | ||||||||||| |||||||||||||||||||    
T  17316588 taaaaagttaactttttcttataataaggaccggagggagta 17316629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 22210872 - 22210803
Alignment:
Q  216 tagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataa 285  Q
    |||||||||||||||| ||||||  |||||||||  |||||| ||||||||||  | |||||||| ||||    
T  22210872 tagtctatatttacaacaagatatattaattattcaatgaatttaaaaagtcaattgtttcttataataa 22210803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 29686447 - 29686398
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||| |||||||||||  | |||||||| ||||||||||||||||||||    
T  29686447 atgaacctaaaaagtcaaatgtttcttataataaggaccggagggagtat 29686398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 48361099 - 48361050
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||||||||  |||||||||| |  |||||||||||||||||    
T  48361099 atgaatctaaaaagtcaaatttttcttataaataggaccggagggagtat 48361050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 4418198 - 4418246
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||| ||||||| |||  |||||||||| |||||||||||||||||||    
T  4418198 atgaacctaaaaaatcaattttttcttataataaggaccggagggagta 4418246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 44111846 - 44111894
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||||||||||||| ||||||||||| |  | ||||||||||||||    
T  44111846 atgaatctaaaaagtcaactttttcttataaataagaccggagggagta 44111894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 52136746 - 52136698
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||| ||||||||| |  |||||||||| |||||||||||||||||||    
T  52136746 atgaacctaaaaagttaattttttcttataataaggaccggagggagta 52136698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 158 - 301
Target Start/End: Complemental strand, 20502233 - 20502085
Alignment:
Q  158 tccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatttta 252  Q
    ||||||| || ||||||| ||||||||||||| |||||||||||||||| ||||||      ||||||||||||||||||||||||| ||||||||| ||    
T  20502233 tccctccggtccttattataagaaacaattaatttttttggttcattgtgtaagtgatgtatctagtctatatttacaataagatacattaattattcta 20502134  T
Q  253 tgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||||||| ||||||||||| |||||||||||||| |||||    
T  20502133 tgaatctaaaaagtcaactttttcttataataaggaccggaggaagtat 20502085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 38978891 - 38978741
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    ||||||||||  | ||||||| ||||||||||||| |||||||||||||||| ||||||      ||||||||||||||||||||||||  |||||||||    
T  38978891 tactccctccgatccttattataagaaacaattaatttttttggttcattgtgtaagtgatgtatctagtctatatttacaataagatatattaattatt 38978792  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
     |||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  38978791 ctatgaatctaaaaagtcaactttttcttataataaggactggagggagta 38978741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 29452041 - 29451891
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    ||||||||||  | ||||||| ||||||||||| | |||||||||||||||| ||||||      ||||| ||||||||||||||||||| |||||||||    
T  29452041 tactccctccgatccttattataagaaacaattga-ttttttggttcattgtgtaagtgatgtatctagtatatatttacaataagatacattaattatt 29451943  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  29451942 ctatgaatctaaaaaatcaactttttcttataataaggaccggagggagtat 29451891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 33247291 - 33247441
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||| ||||||||||||||||||||||| ||||||||      ||||||||||||||||||||||||  |||||||||    
T  33247291 tactccctccggtccttattataagagacaattaacttttttggttcattctataagtgatatatctagtctatatttacaataagatatattaattatt 33247390  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    | ||||| ||||||||||| ||||||||||| | |||||||||||| |||||    
T  33247391 t-atgaacctaaaaagtcaactttttcttataacaaggaccggaggaagtat 33247441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 155 - 295
Target Start/End: Original strand, 29874316 - 29874461
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| ||||||| || ||||||||||| |||||||||||||||||| ||||||      |||||||||||||  ||||| |||| |||||||||    
T  29874316 tactccctccggttcttaatataagaaacaattgacttttttggttcattgtttaagtgatgtatctagtctatatttttaataaaatacattaattatt 29874415  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagg 295  Q
     |||||| ||||||||| | |||||||||||  |||||||||||||    
T  29874416 ctatgaacctaaaaagttaactttttcttatattaaggaccggagg 29874461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 7537170 - 7537019
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| || |||||||| | |||||||||||||||| ||||||      ||||| ||||||||| ||||||||| |||||||||    
T  7537170 tactccctccggtccttattataaaaaacaattgatttttttggttcattgtgtaagtgatgtatctagtatatatttacgataagatacattaattatt 7537071  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     ||| || |||| ||||||  |||||||||| ||||| ||||||||||||||    
T  7537070 ctattaacctaagaagtcaattttttcttataataagaaccggagggagtat 7537019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 298
Target Start/End: Original strand, 9630248 - 9630382
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||       |||  ||||||||||||||||||| ||||||||| |||||||||||||    
T  9630248 cttattataagaaacaattaatttttttggttcattgtgtaagtgatatatttagattatatttacaataagatacattaattattctatgaatctaaaa 9630347  T
Q  264 agtcatctttttcttattataaggaccggagggag 298  Q
    | |||  ||||| |||| |||| ||||||||||||    
T  9630348 aatcaattttttgttataataaagaccggagggag 9630382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 35205057 - 35204922
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| ||||||||||| |||||||| ||||||||| |||| |      |||| |||||||||||||||||||| ||||||||| |||||| |||||||    
T  35205057 ttattataagaaacaattgacttttttagttcattgtgtaagggatgtatctagactatatttacaataagatacattaattattctatgaacctaaaaa 35204958  T
Q  265 gtcatctttttcttattataaggaccggagggagtat 301  Q
     ||| ||||||||||| ||||| || |||||||||||    
T  35204957 -tcaactttttcttataataagtacaggagggagtat 35204922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 35212102 - 35212237
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| ||||||||||| |||||||| ||||||||| |||| |      |||| |||||||||||||||||||| ||||||||| |||||| |||||||    
T  35212102 ttattataagaaacaattgacttttttagttcattgtgtaagggatgtatctagactatatttacaataagatacattaattattctatgaacctaaaaa 35212201  T
Q  265 gtcatctttttcttattataaggaccggagggagtat 301  Q
     ||| ||||||||||| ||||| || |||||||||||    
T  35212202 -tcaactttttcttataataagtacaggagggagtat 35212237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 5355700 - 5355550
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||||||| || |||||||| ||||||||| ||||||       |||| ||||||||||||||||||| |||||||||    
T  5355700 tactccctccggtccttattataagaaacagttgacttttttagttcattgtgtaagtgatgtatttagtttatatttacaataagatacattaattatt 5355601  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
     |||||| |||||| || | ||||||||||  |||| || |||||||||||    
T  5355600 ctatgaacctaaaatgttaactttttcttagaataaagatcggagggagta 5355550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 32455203 - 32455288
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||||||||||||||||||||| ||||||||| ||||||  ||||| || | ||||||||||| |||||||| ||||||||||    
T  32455203 ctagtctatatttacaataagatacattaattattctatgaacttaaaatgttaactttttcttataataaggactggagggagta 32455288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 290
Target Start/End: Original strand, 24173419 - 24173559
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||||| |||| | |||||| ||||||||| ||||||      ||| ||||||||| ||||||||||| |||||||||    
T  24173419 tactccctccagtccttattataagaaataattgatttttttagttcattgtgtaagtgatgtatctaatctatattttcaataagatacattaattatt 24173518  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggacc 290  Q
     ||| ||  |||||||||| ||||||||||| |||||||||    
T  24173519 ctataaacttaaaaagtcaactttttcttataataaggacc 24173559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 27600893 - 27600758
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| |||||| |||| | ||||||| |||||||| ||||||      ||| ||||||||||||||||||||| ||||||||| ||||||  |||||    
T  27600893 cttattataagaaataattgatttttttgattcattgtgtaagtgatttatctaatctatatttacaataagatacattaattattctatgaacttaaaa 27600794  T
Q  264 agtcatctttttcttattataaggaccggagggagta 300  Q
    |||||  |||||||||| |||| ||||||||||||||    
T  27600793 agtca-atttttcttataataaagaccggagggagta 27600758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 300
Target Start/End: Original strand, 29002741 - 29002891
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    ||||||||||  | ||| ||| ||||||||||| |||||||||||||||||| ||||||      ||||||||||||| | ||||||||  |||||||||    
T  29002741 tactccctccgatccttgttataagaaacaattgacttttttggttcattgtgtaagtgatgtatctagtctatattttcgataagatatattaattatt 29002840  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
      || || ||||||| ||| ||||||||||| ||||||||  |||||||||    
T  29002841 ccataaacctaaaaaatcaactttttcttataataaggacatgagggagta 29002891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 19211364 - 19211278
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||||||||| ||||||| ||||||| |  |||||| ||||||||||    |||||||| ||||||||||||||||||||    
T  19211364 ctagtctatatttacaacaagatacattaattactcaatgaatataaaaagtcaaaagtttcttataataaggaccggagggagtat 19211278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 33970671 - 33970802
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| ||||||||||||||||||||  || ||||||||| ||       |||| |||||||  ||||| |||| ||||||||| |||||| ||||| |    
T  33970671 ttattataagaaacaattaacttttttattttattgtataaatgatgtatttagtatatatttttaataaaatacattaattattctatgaaactaaaca 33970770  T
Q  265 gtcatctttttcttattataaggaccggaggg 296  Q
     ||| ||||||||||| |||||||||||||||    
T  33970771 atcaactttttcttataataaggaccggaggg 33970802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 30132937 - 30132884
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtat 208  Q
    |||||||||| || ||||||| ||||||||||||||||||||| ||||||||||    
T  30132937 tactccctccggtccttattataagaaacaattaacttttttgattcattgtat 30132884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 8680691 - 8680632
Alignment:
Q  154 ctactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtg 213  Q
    ||||||||||| || ||||||| |||||||| || ||||||| |||||||||| ||||||    
T  8680691 ctactccctccggtccttattataagaaacatttgactttttaggttcattgtttaagtg 8680632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 73831 - 73781
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtatc 302  Q
    |||||||||||||||||  | ||| |||| |||||||||||||||||||||    
T  73831 atgaatctaaaaagtcaattgttttttataataaggaccggagggagtatc 73781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 13789822 - 13789884
Alignment:
Q  241 ttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtatct 303  Q
    |||||||||  |||||||| |||||||| ||||||||||| |  || ||||||||||||||||    
T  13789822 ttaattattcaatgaatctgaaaagtcaactttttcttataaatagaaccggagggagtatct 13789884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 5355660 - 5355701
Alignment:
Q  260 aaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||| || |||||||| ||||||||||||||||||||    
T  5355660 aaaaagtcaactgtttcttataataaggaccggagggagtat 5355701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 30132885 - 30132840
Alignment:
Q  256 atctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||| |  |||||||||| ||||||||||||||||||||    
T  30132885 atctaaaaagttaattttttcttataataaggaccggagggagtat 30132840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 8680642 - 8680690
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||| |||||||||||  | |||||||| |||||||||||||||||||    
T  8680642 atgaacctaaaaagtcaaatgtttcttataataaggaccggagggagta 8680690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 13278990 - 13279030
Alignment:
Q  255 aatctaaaaagtcatctttttcttattataaggaccggagg 295  Q
    |||||||||||||| || |||||||| ||||||||||||||    
T  13278990 aatctaaaaagtcaactgtttcttataataaggaccggagg 13279030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 22731348 - 22731408
Alignment:
Q  241 ttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||| ||||||||||||| | | ||||||||||| |  ||||||||||| |||||    
T  22731348 ttaattatttaatgaatctaaaaaattaactttttcttataaataggaccggaggtagtat 22731408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 29031137 - 29031185
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||||||||||| | ||||||||||| |  ||||||||||||||||    
T  29031137 atgaatctaaaaagttaactttttcttataaataggaccggagggagta 29031185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 41487940 - 41487789
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||||||||||| | |||||||||||||||| ||||||      ||||||||||||||||||||||||| |||||||||    
T  41487940 tactccctccggtccttattataagaaacaattgatttttttggttcattgtgtaagtgatgtatctagtctatatttacaataagatacattaattatt 41487841  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  41487840 ctatgaacctaaaaagtcaactttttcttataataaggaccggagggagtat 41487789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 12806991 - 12806906
Alignment:
Q  216 tagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  12806991 tagtctatatttacaataagatacattaattattttatgaacctaaaaagtcaactttttcttataataaggaccggagggagtat 12806906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 27320443 - 27320293
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||  || ||||||| ||||||||||| | ||||||||||||||||||||||       ||||||||||||||||||||||||  | |||||||    
T  27320443 tactccctctggtccttattataagaaacaattgatttttttggttcattgtataagtaatgtttctagtctatatttacaataagatatatcaattatt 27320344  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||  |||||||||| ||||||||||| |||||||| ||||||||||    
T  27320343 ttatgaacttaaaaagtcaactttttcttataataaggacgggagggagta 27320293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 41395675 - 41395812
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||      |||||||||||||| |||||||||  ||||||||| |||||||||||||    
T  41395675 cttattataagaaacaattaacttttttaattcattgtataagtgatgtatctagtctatatttataataagatatattaattattctatgaatctaaaa 41395774  T
Q  264 agtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||| ||||||||||| ||||| |||| ||| |||||    
T  41395775 agtcaactttttcttataataagaaccgaaggaagtat 41395812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 45123379 - 45123247
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| |||||| |||||||||||||| |||||||||||||||      ||| |||||||||| |||||||||| ||||||||| ||||||| ||||||    
T  45123379 ttattataagaaataattaacttttttgattcattgtataagtgatgtatctaatctatatttataataagatacattaattattctatgaatttaaaaa 45123280  T
Q  265 gtcatctttttcttattataaggaccggaggga 297  Q
    |||| |||||| ||||  |||||||||||||||    
T  45123279 gtcaacttttttttatagtaaggaccggaggga 45123247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 47484085 - 47484171
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||| ||||| |||||||| |||||||||||    
T  47484085 ctagtctatatttacaataagatacattaattattctatgaacctaaaaagtcaacttttacttataataaggacaggagggagtat 47484171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 40198687 - 40198603
Alignment:
Q  216 tagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||||||||||| ||||| | ||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  40198687 tagtctatatttacaacaagatgcattaattattctatgaacctaaaaagtcaactttttcttataataaggaccggagggagta 40198603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 18064871 - 18064721
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||| ||| || |||| || |||||||| || || ||||| ||||||||| ||||||      ||||||||||||| ||||||||||| |||||||||    
T  18064871 tactccatccggtccttaatataagaaacagttgacatttttagttcattgtttaagtgatgtatctagtctatattttcaataagatacattaattatt 18064772  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
     ||||||  |||||||| | |||||||||||  ||||||||||||||||||    
T  18064771 ctatgaacttaaaaagttaactttttcttatattaaggaccggagggagta 18064721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 47280188 - 47280297
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataa-----gtggctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| ||||||||||||||||||||| ||||||||||||     ||   |||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  47280188 ttattataagaaacaattaacttttttg-ttcattgtataaataatgtatttagtctatatttacaataagatacattaattattctatgaacctaaaaa 47280286  T
Q  265 gtcatcttttt 275  Q
    |||| ||||||    
T  47280287 gtcaacttttt 47280297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 22618312 - 22618162
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    ||||| |||| || ||||||| ||||||||||| ||||||| |||||||||| ||||||      ||||||||||||||||| ||||||| ||||||| |    
T  22618312 tactcactccggtccttattataagaaacaattgactttttaggttcattgtgtaagtgatgtatctagtctatatttacaacaagatacattaattact 22618213  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
      ||||||||||||| |||    |||||||| ||||||| |||| ||||||    
T  22618212 caatgaatctaaaaaatcaaaaatttcttataataaggaacggatggagta 22618162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 47612439 - 47612289
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||| | ||||| ||||||| ||||||||||||||||       |||||||||||||| ||  |||||| |||||||||    
T  47612439 tactccctccggtccttattataagcagcaattgactttttaggttcattgtataagtaatgtatctagtctatatttataacgagatacattaattatt 47612340  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
      ||||| |||||||||||| | || || || |||||||||||||||||||    
T  47612339 caatgaacctaaaaagtcatttgttgctaataataaggaccggagggagta 47612289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 37006470 - 37006599
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| ||||||||||| |||||||| ||| ||||||||||||      | ||| ||||||||||||| ||||| ||||||||| ||||||  ||||||    
T  37006470 ttattataagaaacaattgacttttttagtttattgtataagtgatgtatccagtttatatttacaatatgatacattaattattctatgaacttaaaaa 37006569  T
Q  265 gtc-atctttttcttattataaggaccgga 293  Q
    ||| || |||||||||| ||||||||||||    
T  37006570 gtcaatttttttcttataataaggaccgga 37006599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 297
Target Start/End: Complemental strand, 24164665 - 24164518
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    ||||||||||  | ||||||| |||||||| || ||||||| |||||||| | ||||||      |||||||||||||  || ||||||| |||||||||    
T  24164665 tactccctccgatccttattataagaaacatttgactttttaggttcattatgtaagtgatgtatctagtctatatttctaacaagatacattaattatt 24164566  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggaggga 297  Q
     |||||| | ||||| |||  | |||||||| ||||||||||||||||    
T  24164565 ctatgaaccaaaaaaatcaattgtttcttataataaggaccggaggga 24164518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 45025678 - 45025592
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||||| || ||||||| ||||||||| |||||| | ||||| |||  | |||||||| ||||||||||||| ||||||    
T  45025678 ctagtctatatttataacaagatacattaattattctatgaaccaaaaaaatcaattgtttcttataataaggaccggagtgagtat 45025592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 33901122 - 33901037
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||||||||| || ||||||| |||| |||| |||||||| ||||| |||  | |||||||| |||||||| ||||||||||    
T  33901122 ctagtctatatttataacaagatacattaactattctatgaatcaaaaaaatcaattgtttcttataataaggacaggagggagta 33901037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 41088936 - 41088851
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||||||||| ||  | |||| |||||||||  |||||||||||||||||  | |||||| | |||||||||||||||||||    
T  41088936 ctagtctatatttataacgaaatacattaattattcaatgaatctaaaaagtcaattgtttcttgtaataaggaccggagggagta 41088851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 10674258 - 10674122
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||| ||||||| | |||||| | ||||||      ||| |||||||||| || ||||||| |||||||||  ||||| ||||||    
T  10674258 cttattataagaaacaattgactttttagattcattatgtaagtgatgtatctaatctatatttataacaagatacattaattattcaatgaacctaaaa 10674159  T
Q  264 agtcatctttttcttattataaggaccggagggagta 300  Q
    |||||  | ||| |||| ||||| |||||||||||||    
T  10674158 agtcaaatgttttttataataagtaccggagggagta 10674122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 10007658 - 10007725
Alignment:
Q  233 aagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||| ||||||||   ||||||||||||||||| ||||||||||| |  ||||||||||||||||    
T  10007658 aagatacattaattatacaatgaatctaaaaagtcaactttttcttataaataggaccggagggagta 10007725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 13860281 - 13860363
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggaggga 297  Q
    |||||||||||||| || || |||| ||||||||   |||||||||||||||||  | |||||||| ||||||| ||||||||    
T  13860281 ctagtctatatttataacaatatacattaattatacaatgaatctaaaaagtcaattgtttcttataataaggatcggaggga 13860363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 24932518 - 24932460
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtg 213  Q
    ||||||||||  | ||||||| |||| ||||||||||||||| ||||||||||||||||    
T  24932518 tactccctccgatccttattataagagacaattaacttttttagttcattgtataagtg 24932460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 2523871 - 2523920
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||||||||| ||||||||||| |  |||||||||||||||||    
T  2523871 atgaatctaaaaagtcaactttttcttataaataggaccggagggagtat 2523920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 7456483 - 7456536
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtca 268  Q
    ||||||||||||||||| ||||||| ||||||| |  |||||||||||||||||    
T  7456483 ctagtctatatttacaacaagatacattaattactcaatgaatctaaaaagtca 7456536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 24932446 - 24932381
Alignment:
Q  236 atacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||| ||||||||| |||||| |||||||||||  |||||||||| |||||||||| ||| |||||    
T  24932446 atacattaattattctatgaacctaaaaagtcaattttttcttataataaggaccgaaggaagtat 24932381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 40234765 - 40234854
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataa-----gtggctagtctatatttacaataagatac 239  Q
    |||||||||| |||||||||| ||||||||||| ||||||| | |||||||| |||     ||  ||||||||||||||||| |||||||    
T  40234765 tactccctccggttcttattataagaaacaattgactttttagattcattgtgtaactgatgtatctagtctatatttacaacaagatac 40234854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 28248569 - 28248429
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttc----attgtataagtg-----gctagtctatatttacaataagatacgttaattattttatgaatcta 260  Q
    |||||||||||||||||||||||||| |||||    ||||| ||||||       ||||||||||||| ||  |||| | |||||||||  |||||||||    
T  28248569 ttattacaagaaacaattaactttttaggttcattaattgtgtaagtgatgtatatagtctatatttataacgagatgcattaattattcaatgaatcta 28248470  T
Q  261 aaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||| ||||  | |||||||| ||||||||  ||||||||||    
T  28248469 aaatgtcaattgtttcttataataaggactcgagggagtat 28248429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 41088851 - 41088906
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataa 210  Q
    |||||||||| || ||||||||||||||||||| ||||||| | ||||||| ||||    
T  41088851 tactccctccggtccttattacaagaaacaattgactttttagattcattgaataa 41088906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 14543352 - 14543266
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||||||||  ||||||| ||||||| |  ||||||||||||| |||    |||||||| |||| ||| |||||||||||    
T  14543352 ctagtctatatttacatcaagatacattaattactcaatgaatctaaaaaatcaaaagtttcttataataaagacaggagggagtat 14543266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 34840657 - 34840608
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||||||| | ||||| ||||| |||| |||||||||||||||    
T  34840657 atgaatctaaaaagtgaacttttgcttataataatgaccggagggagtat 34840608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 13807289 - 13807241
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||||||||||||| ||||||||||| |  | ||||||||||||||    
T  13807289 atgaatctaaaaagtcaactttttcttataaataagaccggagggagta 13807241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 40234813 - 40234765
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||||||||||||  | |||||||| ||||| |||||||||||||    
T  40234813 atgaatctaaaaagtcaattgtttcttataataagaaccggagggagta 40234765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 45113747 - 45113884
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||| | |||||||||||||||| ||||||      ||||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  45113747 cttattataagaaacaattgatttttttggttcattgtgtaagtgatgtatctagtctatatttacaataagatacattaattattctatgaacctaaaa 45113846  T
Q  264 agtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  45113847 agtcaactttttcttataataaggaccggagggagtat 45113884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 27302093 - 27302228
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaa 264  Q
    |||||| |||||| ||||||||||||||||||||||||||||||      |||||||||||||||||| |||||| ||||||||| |||||| |||||||    
T  27302093 ttattataagaaagaattaacttttttggttcattgtataagtgatgtatctagtctatatttacaattagatacattaattattctatgaacctaaaaa 27302192  T
Q  265 gtcatctttttcttattataaggaccggagggagta 300  Q
    |||| ||||||||||| |||| ||||||||| ||||    
T  27302193 gtcaactttttcttataataaagaccggaggaagta 27302228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 53284465 - 53284315
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||| ||||| || ||||||| ||||||||||| | |||||||||| ||||||||||||      |||||||| |||||||||||||||| |||||||||    
T  53284465 tacttcctccggtccttattataagaaacaattgatttttttggtttattgtataagtgatgtatctagtctacatttacaataagatacattaattatt 53284366  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||| ||||||| ||| ||||||||||| ||||||||| || ||||||    
T  53284365 ttatgaaactaaaaaatcaactttttcttataataaggaccagaaggagta 53284315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 43901730 - 43901592
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||| ||||| || ||||||| |||||||||||||||||||||||||||||| ||| ||      ||||||||||||| ||||||||||| |||||||||    
T  43901730 tactacctccggtccttattataagaaacaattaacttttttggttcattgtgtaaatgatgtacctagtctatattttcaataagatacattaattatt 43901631  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataagga 288  Q
     |||||| ||||||||||| ||||||| ||| |||||||    
T  43901630 ctatgaacctaaaaagtcaactttttcatataataagga 43901592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 16123891 - 16123756
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| || |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||  ||||||||||||| || || |||    
T  16123891 cttattataaaaaacaattaacttttttggttcattgtataagtaatgtatctagtctatatttacaataagatatattaattattttataaacct-aaa 16123793  T
Q  264 agtcatctttttcttattataaggaccggagggagta 300  Q
    |||||  |||||||||| |||||||||||||| ||||    
T  16123792 agtcaattttttcttataataaggaccggaggaagta 16123756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 50659948 - 50660088
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtggctagtctatatttacaataagatacgttaattattttatg 254  Q
    |||||||||  || |||||||  |||||||||| | |||||||||||||||| ||||||       | ||| ||||||||||||| ||||||||| |||     
T  50659948 tactccctctggtccttattattagaaacaattgatttttttggttcattgtgtaagtga------tgtatctacaataagatacattaattattctata 50660041  T
Q  255 aatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  50660042 aatctaaaaagtcaactttttcttataataaggaccggagagagtat 50660088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 50100207 - 50100345
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||      |||||||||||||| ||||||||||||||||| || |||||||| || |    
T  50100207 cttattataagaaacaattgacttttttagttcattgtataagtgatgtatctagtctatatttataataagatacgttaatttttctatgaatcaaaca 50100306  T
Q  264 ag-tcatctttttcttattataaggaccggagggagtat 301  Q
    || | ||  |||| |||| ||||||||||||||||||||    
T  50100307 agttaattatttttttataataaggaccggagggagtat 50100345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 21944416 - 21944295
Alignment:
Q  177 aagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatct 271  Q
    ||||||||||| | ||||||||||| |||| |||||||     ||||||||||| |||| |||||||| ||||||||| |||||| |||||||||||  |    
T  21944416 aagaaacaattgatttttttggttccttgtgtaagtggtgtatctagtctatatctacactaagatacattaattattctatgaacctaaaaagtcaatt 21944317  T
Q  272 ttttcttattataaggaccgga 293  Q
    ||||||||| ||||||||||||    
T  21944316 ttttcttataataaggaccgga 21944295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 31376174 - 31376325
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||||||| || ||||||| |||||||| | ||||||      |||||||||||||| || ||||||| |||||||||    
T  31376174 tactccctccggtccttattataagaaacatttgactttttaggttcattatgtaagtgatgtatctagtctatatttataagaagatacattaattatt 31376273  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||| | |||||||||  | |||||| | ||||||||||||||||||||    
T  31376274 ctatgaaccaaaaaagtcaattgtttcttgtaataaggaccggagggagtat 31376325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 46220450 - 46220365
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| |||||| |||  |||||||||| |||||||||||| ||||||    
T  46220450 ctagtatatatttacaataagatacattaattattctatgaatataaaaaatcaattttttcttataataaggaccggatggagta 46220365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 301
Target Start/End: Original strand, 39616909 - 39617061
Alignment:
Q  154 ctactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattat 248  Q
    ||||||||||| || ||||||| |||||||| || ||||||  |||||||| | ||||||      |||||||||||||| || ||||||| ||||||||    
T  39616909 ctactccctccggtccttattataagaaacatttgacttttaaggttcattatgtaagtgatgtatctagtctatatttataacaagatacattaattat 39617008  T
Q  249 tttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    | |||||| | |||||||||  | |||||| | ||||||||||||||||||||    
T  39617009 tctatgaaccaaaaaagtcaattgtttcttgtaataaggaccggagggagtat 39617061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 53703880 - 53703728
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaa-ttaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattat 248  Q
    |||||||||| || ||||||| |||||| || || || |||| |||||||||| ||||||      |||||||||||||| || ||||||| ||||||||    
T  53703880 tactccctccggtccttattataagaaaaaagttgaccttttaggttcattgtgtaagtgatgtatctagtctatatttataacaagatacattaattat 53703781  T
Q  249 tttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    | |||||| | |||||||||  | |||||||| ||||||||||||||||||||    
T  53703780 tctatgaaccaaaaaagtcaattgtttcttataataaggaccggagggagtat 53703728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 24489377 - 24489461
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||| ||||||||| ||||||||| ||||||||| ||||||| |||||| ||| |||| |||||| ||||||| |||||||||||    
T  24489377 ctagtttatatttactataagatacattaattattctatgaatttaaaaa-tcaactttgtcttataataaggatcggagggagta 24489461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 19227372 - 19227458
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||||| || ||||||  ||||||||| |||||| | ||||| |||  | |||||||| ||||||||||||||||||||    
T  19227372 ctagtctatatttataacaagataaattaattattctatgaaccaaaaaaatcaattgtttcttataataaggaccggagggagtat 19227458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 44118247 - 44118333
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||||| || || |||| |||||||| | |||||||||||||||||  | |||||||| ||||||||| |||| |||||    
T  44118247 ctagtctatatttataacaatatacattaattatataatgaatctaaaaagtcaattgtttcttataataaggaccagaggaagtat 44118333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 300
Target Start/End: Original strand, 48346449 - 48346599
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    ||||||||||||||||||||| || ||||  || |||||||  ||| ||| | ||||||      |||||||||||||| || ||||||| ||||||| |    
T  48346449 tactccctcccgttcttattataaaaaacttttgactttttaagtttattatgtaagtgatgtatctagtctatatttataacaagatacattaattact 48346548  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    | ||||||||||||||| |    |||||||| ||||||| |||||||||||    
T  48346549 taatgaatctaaaaagtaaaaagtttcttataataaggatcggagggagta 48346599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 2544606 - 2544550
Alignment:
Q  157 ctccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtg 213  Q
    |||||||| || ||||||||||||||||||| ||||||| | |||||||||||||||    
T  2544606 ctccctccggtccttattacaagaaacaattgactttttagattcattgtataagtg 2544550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 31376324 - 31376276
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcat 203  Q
    |||||||||| || ||||||||||||||||||| |||||||||||||||    
T  31376324 tactccctccggtccttattacaagaaacaattgacttttttggttcat 31376276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 39617060 - 39617012
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcat 203  Q
    |||||||||| || ||||||||||||||||||| |||||||||||||||    
T  39617060 tactccctccggtccttattacaagaaacaattgacttttttggttcat 39617012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 21662933 - 21662884
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||||||||| ||||||||||| |  |||||||||||||||||    
T  21662933 atgaatctaaaaagtcaactttttcttataaataggaccggagggagtat 21662884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 48643668 - 48643753
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||||||||| ||  | |||| |||||||||  |||||||||||||||||  | |||||| | |||||||| ||||||||||    
T  48643668 ctagtctatatttataacgaaatacattaattattcaatgaatctaaaaagtcaattgtttcttgtaataaggactggagggagta 48643753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 2544435 - 2544491
Alignment:
Q  154 ctactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataa 210  Q
    ||||||||||| || ||||||| ||||||||||| ||||||| ||||||||| ||||    
T  2544435 ctactccctccggtccttattataagaaacaattgactttttaggttcattgaataa 2544491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 53703729 - 53703777
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcat 203  Q
    |||||||||| || ||||||| ||||||||||| |||||||||||||||    
T  53703729 tactccctccggtccttattataagaaacaattgacttttttggttcat 53703777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 27363229 - 27363276
Alignment:
Q  219 tctatatttacaataagatacgttaattattttatgaatctaaaaagt 266  Q
    |||||||||| || ||||||||||||||| || |||||||||||||||    
T  27363229 tctatatttataacaagatacgttaattacttaatgaatctaaaaagt 27363276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 48643753 - 48643698
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataa 210  Q
    |||||||||| || ||||||||||||||||||| ||||||| | ||||||| ||||    
T  48643753 tactccctccagtccttattacaagaaacaattgactttttagattcattgaataa 48643698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 53441997 - 53442056
Alignment:
Q  241 ttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||||  |||||| |||||||||| ||||||||||| |  ||||||||||||||||    
T  53441997 ttaattattcaatgaatttaaaaagtcaactttttcttataaataggaccggagggagta 53442056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 31376222 - 31376173
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||| |||||||||||  | |||||||| ||||||||||||||||||||    
T  31376222 atgaacctaaaaagtcaaatgtttcttataataaggaccggagggagtat 31376173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 51517002 - 51516957
Alignment:
Q  255 aatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||||||||| ||||||||||| |  ||||||||||||||||    
T  51517002 aatctaaaaagtcaactttttcttataaataggaccggagggagta 51516957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 2544484 - 2544436
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||| |||||||||||  | |||||||| |||||||||||||||||||    
T  2544484 atgaacctaaaaagtcaattgtttcttataataaggaccggagggagta 2544436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 19227457 - 19227409
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcat 203  Q
    |||||||||| || ||||||| ||||||||||| | |||||||||||||    
T  19227457 tactccctccggtccttattataagaaacaattgatttttttggttcat 19227409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 30438893 - 30438741
Alignment:
Q  154 ctactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattat 248  Q
    |||||||||||  | ||||||| |||||| ||||||||||||||||| ||||||||||||      |||||||||||||||||||| |||| ||||||||    
T  30438893 ctactccctccgatccttattataagaaataattaacttttttggtttattgtataagtgatgtatctagtctatatttacaataaaatacattaattat 30438794  T
Q  249 tttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    | |||||||||||||||||| ||||||||||| ||||||| || |||||||||    
T  30438793 tctatgaatctaaaaagtcaactttttcttataataaggatcgaagggagtat 30438741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 28605569 - 28605720
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||  || ||||||| |||||||||||||||||||||||||||||| ||||||       ||  |||||||||||||||||||| |||||||||    
T  28605569 tactccctctggtccttattataagaaacaattaacttttttggttcattgtgtaagtgatgtatttaaactatatttacaataagatacattaattatt 28605668  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     ||||||||||||| |||| ||||||||||| |||||||||||| |||||||    
T  28605669 ctatgaatctaaaaggtcagctttttcttataataaggaccggatggagtat 28605720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 12217526 - 12217635
Alignment:
Q  191 ttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtc-atctttttcttattata 284  Q
    |||||||||| ||||||||||||      ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||    
T  12217526 ttttttggtttattgtataagtgatgtatctagtctatatttacaataagatacattaattattctatgaatctaaaaagtcaatttttttcttataata 12217625  T
Q  285 aggaccggag 294  Q
    ||||||||||    
T  12217626 aggaccggag 12217635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 10145279 - 10145364
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||| |||| |||| ||||| ||||||||    
T  10145279 ctagtctatatttacaataagatacattaattattttatgaacctaaaaagtcaatttttttttataataaagaccgaagggagta 10145364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 12605675 - 12605756
Alignment:
Q  216 tagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggaggga 297  Q
    |||||||||||||||||||||||| |||||||||  ||||| |||||| |||| ||||||||||| |||| |||||||||||    
T  12605675 tagtctatatttacaataagatacattaattattccatgaacctaaaatgtcaactttttcttataataaagaccggaggga 12605756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 2913482 - 2913331
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataa-----gtggctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||| ||||||| ||||||| ||||||||||||||     ||  |||||||||||||| ||  |   || |||||||||    
T  2913482 tactccctccggtccttattataagcaacaattgactttttaggttcattgtataagtaatgtatctagtctatatttataacgacgaacattaattatt 2913383  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
      |||||||||||||||||  | || ||||| ||||||||||||||||||||    
T  2913382 caatgaatctaaaaagtcaaatgttgcttataataaggaccggagggagtat 2913331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 9343204 - 9343134
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataa 285  Q
    |||||||||||||| || ||||||| ||||||||| ||||||||||||||||||  | |||||||| ||||    
T  9343204 ctagtctatatttataacaagatacattaattattctatgaatctaaaaagtcaattatttcttataataa 9343134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 3847472 - 3847537
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttat 280  Q
    |||||||||||||| ||||| |||  ||||||||| |||||| |||||||||||  ||||||||||    
T  3847472 ctagtctatatttataataaaatatattaattattatatgaacctaaaaagtcacttttttcttat 3847537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 23916228 - 23916276
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |||||||||||||||||  | |||||||| |||||||||||||||||||    
T  23916228 atgaatctaaaaagtcaattgtttcttataataaggaccggagggagta 23916276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 33127850 - 33127939
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttatta---taaggaccggagggagtat 301  Q
    |||||||||||||  || ||||||| |||||||||  || ||||||||||||||  | ||||||||||   ||||||||||| |||||||    
T  33127850 ctagtctatatttgtaacaagatacattaattattcaataaatctaaaaagtcaattgtttcttattatattaaggaccggatggagtat 33127939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 2230431 - 2230499
Alignment:
Q  233 aagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||| ||||||| |  |||||||||||||||||   ||||||||| |  |||||||||||||||||    
T  2230431 aagatacattaattactcaatgaatctaaaaagtcaaagttttcttataaataggaccggagggagtat 2230499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 23916277 - 23916225
Alignment:
Q  154 ctactccctcccgttcttattacaagaaacaattaacttttttggttcattgt 206  Q
    ||||||||||| || ||||||| ||||||||||| ||||||| | ||||||||    
T  23916277 ctactccctccggtccttattataagaaacaattgactttttagattcattgt 23916225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 36103392 - 36103543
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| || ||||||||||| ||||| ||||||||| ||||||      |||| |||||||||||||||||||| |||||||||    
T  36103392 tactccctccggtccttattataataaacaattaacatttttagttcattgtgtaagtgatgtatctagactatatttacaataagatacattaattatt 36103491  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||| ||||||| ||| ||||||||||| ||||||||||||||||||||    
T  36103492 ctatgaacctaaaaaatcaactttttcttataataaggaccggagggagtat 36103543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 15239705 - 15239842
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||| | ||| |||||||||||| ||||||      ||||||||||||||||||||||||  ||||||||| |||||| ||||||    
T  15239705 cttattataagaaacaattgattttgttggttcattgtgtaagtgatgtatctagtctatatttacaataagatatattaattattctatgaacctaaaa 15239804  T
Q  264 agtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  15239805 agtcaactttttcttataataaggaccggagggagtat 15239842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 301
Target Start/End: Original strand, 28143767 - 28143895
Alignment:
Q  178 agaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctt 272  Q
    |||||||||| | |||||||||||||||| ||||||      |||||||||||||| |||||||||| ||||||||| |||||| ||||||||||| |||    
T  28143767 agaaacaattgatttttttggttcattgtgtaagtgatgtatctagtctatatttataataagatacattaattattctatgaacctaaaaagtcaactt 28143866  T
Q  273 tttcttattataaggaccggagggagtat 301  Q
    |||||||| ||||||||||||||||||||    
T  28143867 tttcttataataaggaccggagggagtat 28143895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 40534517 - 40534663
Alignment:
Q  160 cctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatg 254  Q
    ||||| || ||||||| ||||||||||| | |||||| ||||||||||||| ||      ||||||||||||||||||||||||| ||| ||||| ||||    
T  40534517 cctccggtccttattataagaaacaattgatttttttagttcattgtataaatgatgtatctagtctatatttacaataagatacattatttattctatg 40534616  T
Q  255 aatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    || ||||||||||| |||| |||||| ||||||||||||||||||||    
T  40534617 aacctaaaaagtcaactttatcttataataaggaccggagggagtat 40534663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 45076477 - 45076340
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| || |||||||| |||||||||||||||||| ||||||      ||||||||||| |||||||| |||| ||||||||| |||||| ||||||    
T  45076477 cttattataaaaaacaattgacttttttggttcattgtgtaagtgatgtatctagtctatatgtacaataaaatacattaattattctatgaacctaaaa 45076378  T
Q  264 agtcatctttttcttattataaggaccggagggagtat 301  Q
    | |||  |||||||||| ||||||||||||||||||||    
T  45076377 aatcaattttttcttataataaggaccggagggagtat 45076340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 182 - 292
Target Start/End: Original strand, 23464522 - 23464638
Alignment:
Q  182 acaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa-agtcatcttttt 275  Q
    |||||||||||||||||||||||||||||| |      ||||||||||||||||||||||||| ||||||||| |||||| |||||| | ||| ||||||    
T  23464522 acaattaacttttttggttcattgtataagagatgtatctagtctatatttacaataagatacattaattattctatgaacctaaaataatcaacttttt 23464621  T
Q  276 cttattataaggaccgg 292  Q
    ||||| |||||||||||    
T  23464622 cttataataaggaccgg 23464638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 285
Target Start/End: Complemental strand, 27306843 - 27306725
Alignment:
Q  170 ttattacaagaaacaattaacttttttggttcattgtataagtgg---ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagt 266  Q
    |||||| ||||||||||| | |||||||||| ||||| ||||| |   ||||||||||||||||||||||||| |||||||||  ||||| |||||||||    
T  27306843 ttattataagaaacaattgatttttttggtttattgtgtaagtcgtatctagtctatatttacaataagatacattaattattcaatgaacctaaaaagt 27306744  T
Q  267 catctttttcttattataa 285  Q
    || ||||||||||| ||||    
T  27306743 caactttttcttataataa 27306725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 154 - 300
Target Start/End: Original strand, 27311575 - 27311726
Alignment:
Q  154 ctactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattat 248  Q
    ||||||||||   ||||||||| ||||||||||| ||||||| ||||||||||| || ||      |||||||||||||| || ||||||||||||||||    
T  27311575 ctactccctcggattcttattataagaaacaattgactttttaggttcattgtacaaatgatatatctagtctatatttataacaagatacgttaattat 27311674  T
Q  249 tttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    |  || |||||||||| |||  | |||||| | |||||||||||||||||||    
T  27311675 tcaataaatctaaaaaatcaattgtttcttgtgataaggaccggagggagta 27311726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 25795237 - 25795388
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||| ||||| || ||||||| ||||||||||| ||||||| |||| || || |||||       |||||||||||||| ||  | |||| |||||||||    
T  25795237 tactacctccggtccttattataagaaacaattgactttttaggttaatcgtgtaagtaatgtatctagtctatatttataacgaaatacattaattatt 25795336  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
      |||||||||||||||||  | |||||| | ||||||||||||||||||||    
T  25795337 caatgaatctaaaaagtcaattgtttcttgtaataaggaccggagggagtat 25795388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 9373459 - 9373528
Alignment:
Q  216 tagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataa 285  Q
    |||||||||||||||| |||||||||||||||||  |||||| ||||||||||  | |||||||| ||||    
T  9373459 tagtctatatttacaacaagatacgttaattattcaatgaatttaaaaagtcaattgtttcttataataa 9373528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 12873786 - 12873721
Alignment:
Q  236 atacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||| ||||||| || ||||||||||||||||| ||||||||||| | ||||| ||||||||||||    
T  12873786 atacattaattacttaatgaatctaaaaagtcaactttttcttataaaaaggatcggagggagtat 12873721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 28249018 - 28249062
Alignment:
Q  236 atacgttaattattttatgaatctaaaaagtcatctttttcttat 280  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||    
T  28249018 atacattaattatttaatgaatctaaaaagtcaactttttcttat 28249062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 25795387 - 25795332
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataa 210  Q
    |||||||||| || ||||||||||||||||||| ||||||| | ||||||| ||||    
T  25795387 tactccctccggtccttattacaagaaacaattgactttttagattcattgaataa 25795332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 13775804 - 13775861
Alignment:
Q  244 attattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||| ||| ||||||||||||| |||| |||||| |  |||||||||||||||||    
T  13775804 attatttaatgtatctaaaaagtcaactttctcttataaataggaccggagggagtat 13775861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 41153212 - 41153261
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||||||||| ||||||||||| |  |||| ||||||||||||    
T  41153212 atgaatctaaaaagtcaactttttcttataaataggatcggagggagtat 41153261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 7943521 - 7943589
Alignment:
Q  233 aagatacgttaattattttatgaatctaaaaagtc-atctttttcttattataaggaccggagggagta 300  Q
    ||||||| | |||||||  |||||||||||||||| || |||||||||| |  ||||||||||||||||    
T  7943521 aagatacatcaattattcaatgaatctaaaaagtcaatttttttcttataaataggaccggagggagta 7943589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 300
Target Start/End: Original strand, 52279233 - 52279383
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||  || |||||||  |||| ||||| | |||||||||||||||| ||||||      | ||||||||||||||||||||||  |||||||||    
T  52279233 tactccctctggtccttattattagaagcaattgatttttttggttcattgtgtaagtgatgtatcaagtctatatttacaataagatatattaattatt 52279332  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
     |||||||||||||||||| ||||||||||| ||||||| |||||||||||    
T  52279333 atatgaatctaaaaagtcaactttttcttataataaggatcggagggagta 52279383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 160 - 300
Target Start/End: Original strand, 45977098 - 45977243
Alignment:
Q  160 cctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatg 254  Q
    ||||| || ||||||| |||||||||||||||||||||||| |||||||| |||      ||||||||||||||||||||||||| ||||||||| |||     
T  45977098 cctccggtccttattataagaaacaattaacttttttggtttattgtataggtgatgtatctagtctatatttacaataagatacattaattattctata 45977197  T
Q  255 aatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||  |||||||||| ||||||||||| ||||  |||| ||||||||    
T  45977198 aacgtaaaaagtcaactttttcttataataaaaaccgaagggagta 45977243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 155 - 298
Target Start/End: Original strand, 13320302 - 13320450
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| |||||||||| ||||||||||||| |||||| ||| ||||| ||| ||       ||  |||||||||||||||||||  |||||||||    
T  13320302 tactccctccggttcttattataagaaacaattaattttttttgtttattgtgtaaatgatgtatttaaactatatttacaataagatatattaattatt 13320401  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggag 298  Q
     |||||||||||||||||| ||||||||||| |||| ||| ||||||||    
T  13320402 ctatgaatctaaaaagtcaactttttcttataataaagactggagggag 13320450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 301
Target Start/End: Complemental strand, 15699610 - 15699462
Alignment:
Q  158 tccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatttta 252  Q
    |||||||||| ||||||| | ||||||||| | ||||| |||| ||||||||||||      ||||||||||||||||| ||||||| ||||||| |  |    
T  15699610 tccctcccgtccttattatatgaaacaattgaatttttaggtttattgtataagtgatgtatctagtctatatttacaacaagatacattaattactcaa 15699511  T
Q  253 tgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||| |||    |||||||| ||||||||||||||||||||    
T  15699510 tgaatctaaaaaatcaaaagtttcttataataaggaccggagggagtat 15699462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 13770858 - 13770741
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| |||||||||| |||||||| || ||||||||  || ||||| ||||||      ||||||||||||||||||||||||| |||||||||    
T  13770858 tactccctccggttcttattataagaaacagtttacttttttaatttattgtgtaagtgatgtatctagtctatatttacaataagatacattaattatt 13770759  T
Q  250 ttatgaatctaaaaagtc 267  Q
     |||||||||||| ||||    
T  13770758 ctatgaatctaaatagtc 13770741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 44224404 - 44224300
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| || ||| |||||| ||||||||||||||||| |||||      |||| |||||||||||||||||||| ||||||||| |||||||||||||    
T  44224404 cttattataaaaaataattaatttttttggttcattgtacaagtgatgtatctagactatatttacaataagatacattaattattctatgaatctaaaa 44224305  T
Q  264 agtca 268  Q
    |||||    
T  44224304 agtca 44224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 29438265 - 29438169
Alignment:
Q  177 aagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtca 268  Q
    ||||||||||| |||||||| ||||||||| ||||||      ||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||    
T  29438265 aagaaacaattgacttttttagttcattgtgtaagtgatgtatctagtctatattttcaataagatacattaattattctatgaacctaaaaagtca 29438169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 297
Target Start/End: Original strand, 27687840 - 27687987
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| |||||||||| |||||| |||| | |||||| ||||||| | ||||||      ||||||||||||||||||||||||| |||||||||    
T  27687840 tactccctccggttcttattataagaaataattgaattttttagttcattatgtaagtgatgtatctagtctatatttacaataagatacattaattatt 27687939  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggaggga 297  Q
     ||| ||  |||||||| |  |||||||||| | ||||| || |||||    
T  27687940 ctataaacttaaaaagttaattttttcttataacaaggatcgcaggga 27687987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 51590579 - 51590428
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| |||||| | || || |||| | |||||||| ||||||      |||||||||||||| || ||||||| |||||||||    
T  51590579 tactccctccggtccttattataagaaaaagttgaccttttagattcattgtgtaagtgatgtatctagtctatatttataacaagatacattaattatt 51590480  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
     |||||| | |||||||||  | ||| |||| ||||||||||||||||||||    
T  51590479 ctatgaaccaaaaaagtcaattgttttttataataaggaccggagggagtat 51590428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 19998546 - 19998409
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||| | ||||| | |||||||| ||||||      ||||||||||||||||| ||||||  ||||||| |  |||||| |||||    
T  19998546 cttattataagaaacaattgaatttttagattcattgtgtaagtgatgtatctagtctatatttacaacaagatatattaattactcaatgaatataaaa 19998447  T
Q  264 agtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||    |||||||| ||||||||||||||||||||    
T  19998446 agtcaaaagtttcttataataaggaccggagggagtat 19998409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 32837720 - 32837657
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttctt 278  Q
    |||||||||||| ||||||| |||| ||||||||| |||||| ||||||||||| |||||||||    
T  32837720 ctagtctatattaacaataaaatacattaattattctatgaacctaaaaagtcaactttttctt 32837657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 51590531 - 51590580
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||||||||    
T  51590531 atgaatctaaaaggtcaactttttcttataataaggaccggagggagtat 51590580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 31050385 - 31050249
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtggc-----tagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||| ||||||| |||| ||||| ||||||       |||||||||||||||| || |||| |||||||    ||||||||||||    
T  31050385 cttattataagaaacaattgactttttaggtttattgtgtaagtgatgtatttagtctatatttacaacaaaatacattaattacacaatgaatctaaaa 31050286  T
Q  264 agtcatctttttcttattataaggaccggagggagta 300  Q
    |||||    |||||||| ||||||||| |||||||||    
T  31050285 agtcaaaagtttcttataataaggaccagagggagta 31050249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 25238649 - 25238723
Alignment:
Q  227 tacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||| ||||||| ||||||||| |||||| |||||||||||  | ||| |||| |||||||| |||||||||||    
T  25238649 tacaacaagatacattaattattctatgaacctaaaaagtcaattgttttttataataaggacaggagggagtat 25238723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 200
Target Start/End: Original strand, 13321727 - 13321758
Alignment:
Q  169 cttattacaagaaacaattaacttttttggtt 200  Q
    ||||||||||||||||||||||||||||||||    
T  13321727 cttattacaagaaacaattaacttttttggtt 13321758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 13321798 - 13321716
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggaggga 297  Q
    |||||||||||||| || ||||||| ||||||||||||| || | ||||||| |  | |||||| | ||||||| ||||||||    
T  13321798 ctagtctatatttataacaagatacattaattattttataaaccaaaaaagttaattgtttcttgtaataaggatcggaggga 13321716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 48565635 - 48565677
Alignment:
Q  259 taaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||| | ||||||||||| ||||||||||||||||||||    
T  48565635 taaaaagttaactttttcttataataaggaccggagggagtat 48565677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 18038789 - 18038838
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||||||||||||||  | ||| |||| ||||||||||||||||||||    
T  18038789 atgaatctaaaaagtcaaatgttttttataataaggaccggagggagtat 18038838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 26924260 - 26924211
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||| |||||||||| ||||||||||| |  |||||||||||||||||    
T  26924260 atgaatttaaaaagtcaactttttcttataaataggaccggagggagtat 26924211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 50155399 - 50155448
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||||||||| ||||||||||| |  ||||||||||| |||||    
T  50155399 atgaatctaaaaagtcaactttttcttataaataggaccggaggaagtat 50155448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 52031004 - 52030963
Alignment:
Q  161 ctcccgttcttattacaagaaacaattaacttttttggttca 202  Q
    ||||||| |||||||||| |||||||||||||||||| ||||    
T  52031004 ctcccgtccttattacaaaaaacaattaacttttttgattca 52030963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 29256699 - 29256747
Alignment:
Q  252 atgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||||||||||||| ||||||||||| |  ||||||||||| ||||    
T  29256699 atgaatctaaaaagtcaactttttcttataaataggaccggaggaagta 29256747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 34174899 - 34174943
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtg 213  Q
    ||||||| ||||||||||| ||||||| |||||||||| ||||||    
T  34174899 cttattataagaaacaattgactttttaggttcattgtgtaagtg 34174943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 51590429 - 51590477
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcat 203  Q
    |||||||||| || ||||||| || |||||||| |||||||||||||||    
T  51590429 tactccctccggtccttattataaaaaacaattgacttttttggttcat 51590477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 160 - 302
Target Start/End: Original strand, 25618 - 25766
Alignment:
Q  160 cctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatg 254  Q
    ||||| || ||||||| || ||||||||||||||||||||| ||| ||||||||      |||||||||||||| |||||||||| ||||||||| ||||    
T  25618 cctccggtccttattataaaaaacaattaacttttttggtttattatataagtgatgtatctagtctatatttataataagatacattaattattctatg 25717  T
Q  255 aatctaaaaa-gtcatctttttcttattataaggaccggagggagtatc 302  Q
    ||  |||||| |||| ||||||||||| |||||||||||||| ||||||    
T  25718 aacgtaaaaaagtcaactttttcttataataaggaccggaggaagtatc 25766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 302
Target Start/End: Original strand, 26585 - 26737
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||| || ||||||| ||||||  ||| ||||||| |||||||| | ||||||      ||||||||||||||||| ||||||| ||||||| |    
T  26585 tactccctccggtccttattataagaaaggattgactttttaggttcattatgtaagtgatgtatctagtctatatttacaacaagatacattaattact 26684  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtatc 302  Q
      ||||||||||||| |||    |||||||| |||||||||||||||||||||    
T  26685 caatgaatctaaaaaatcaaaagtttcttataataaggaccggagggagtatc 26737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 3944 - 3807
Alignment:
Q  169 cttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattattttatgaatctaaaa 263  Q
    ||||||| ||||||||||| ||||||| |||||||||| ||||||      |||||||||||||| ||  |||| | |||| ||||  ||||||| ||||    
T  3944 cttattataagaaacaattgactttttaggttcattgtgtaagtgatgtatctagtctatatttataacgagatgcattaagtattcaatgaatcaaaaa 3845  T
Q  264 agtcatctttttcttattataaggaccggagggagtat 301  Q
    |||||  | |||||||| ||||||||||||||||||||    
T  3844 agtcaattgtttcttataataaggaccggagggagtat 3807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 3808 - 3858
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattg 205  Q
    |||||||||| || ||||||| ||||||||||| ||||||||| |||||||    
T  3808 tactccctccggtccttattataagaaacaattgacttttttgattcattg 3858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 112822 - 112973
Alignment:
Q  155 tactccctcccgttcttattacaagaaacaattaacttttttggttcattgtataagtgg-----ctagtctatatttacaataagatacgttaattatt 249  Q
    |||||||||  || ||||||| ||||||||||| || |||| ||||||||||| || ||      ||| |||||||||| || ||||||| |||||||||    
T  112822 tactccctcgggtccttattataagaaacaattgacgttttaggttcattgtacaaatgatgtatctaatctatatttataacaagatacattaattatt 112921  T
Q  250 ttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
      || ||||||||||||||  | ||||||||  |||||||||||||||||||    
T  112922 caataaatctaaaaagtcaattgtttcttatgttaaggaccggagggagtat 112973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 40255 - 40341
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagtat 301  Q
    ||||||||||||||||| ||||||  ||||||| |  |||||||||||||||||    |||||||| ||||||||||||||||||||    
T  40255 ctagtctatatttacaacaagatatattaattactcaatgaatctaaaaagtcaaaagtttcttataataaggaccggagggagtat 40341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 19377 - 19308
Alignment:
Q  216 tagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataagga 288  Q
    |||||||||||||||||||||||  |||||| |   ||||||||||||||||| ||||||||||| |||||||    
T  19377 tagtctatatttacaataagatatattaattct---atgaatctaaaaagtcaactttttcttataataagga 19308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 17469 - 17384
Alignment:
Q  215 ctagtctatatttacaataagatacgttaattattttatgaatctaaaaagtcatctttttcttattataaggaccggagggagta 300  Q
    ||||||||||||||| | ||||||| ||||||| |  ||||||||||||| |||    |||||||| |||| ||||||||||||||    
T  17469 ctagtctatatttactacaagatacattaattactcaatgaatctaaaaaatcaaaagtttcttataataaagaccggagggagta 17384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University