View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10224_7 (Length: 302)
Name: NF10224_7
Description: NF10224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10224_7 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 22016230 - 22016363
Alignment:
| Q |
24 |
tttatgacaggttttgat---tgtagttaagcccactagtaagaaaaggttttgttgttgttcagttgttttccctcctagcatatacataccgtgttgg |
120 |
Q |
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| T |
22016230 |
tttaagacaggttttgatggctgtagttaagccgactagtgagaaaaggttttgttgttgttcagttgttttccctcctagcatgtacgtactgtgttgg |
22016329 |
T |
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| Q |
121 |
-aaaagctgcctgagtttcaatccacctctagct |
153 |
Q |
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| T |
22016330 |
aaaaagctgcctgagtttcaatccacctctagct |
22016363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 22016398 - 22016483
Alignment:
| Q |
151 |
gcttcctctagtatctttgttgtgctggtgtgaagagtgtgttttgactttagtttcacatcctctagaaatatggctttaatagt |
236 |
Q |
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| T |
22016398 |
gcttcctctagtatctttgttgtgctggtgtgaagagtgtgttttgactttagtttcacatcatctagaaatatggctttaatagt |
22016483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 22016470 - 22016527
Alignment:
| Q |
245 |
atggctttaatagtgctataataattttgccattctgcacatttgtgtttattaatca |
302 |
Q |
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| T |
22016470 |
atggctttaatagtgctataataattttgccattctgcacatttgtgtttattaatca |
22016527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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