View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10224_low_1 (Length: 450)
Name: NF10224_low_1
Description: NF10224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10224_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 44286303 - 44285863
Alignment:
| Q |
1 |
tctaaactttgttaaaaatattatcactcggtagcattactaactggttatgttaattactggtttgctaagttaattatcagttgcattactattatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
44286303 |
tctaaactttgttaaaaatattatcactcggtagcattactaactggttatgttaattactggtttgctaagttaactatcaggtgcattactgttatga |
44286204 |
T |
|
| Q |
101 |
gttatttaggttataggatagtttgatgttgctctgtcttggacttttctgtattcaattaggctttgtttggatcagtttctctcttatggtaggttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44286203 |
gttatttaggttataggatagtttgatgttgctctatcttggacttttctgtattcaattaggctttgtttggattagtttctctcttatggtaggttcc |
44286104 |
T |
|
| Q |
201 |
agggccggcccaataattttcaatattcggtgaggcttaaatcaaattttataacacgggactttcttatccgcatatgatgcc-nnnnnnnctttataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
44286103 |
agggccggcccaataattttcaatattcggtgaggcttaaatcaaattttataacacgggacttttttatccgcatatgatgccttttttttctttataa |
44286004 |
T |
|
| Q |
300 |
aactgaagacagataaatttttgttggtgggccgaaaacaagggctttagtggatttacccttgggccggcccttgtaggttctcttctcaattaacata |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44286003 |
aactgaagacagataaatttttgttggtgggccgaaaacaagggctttagtggatttacccttgggccggcccttgtaggttctcttctcaattaacata |
44285904 |
T |
|
| Q |
400 |
agtttaattgttaagaagctttagtactcaatccgtctctg |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44285903 |
agtttaattgttaagaagctttagtactcaatccatctctg |
44285863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 44069710 - 44070150
Alignment:
| Q |
1 |
tctaaactttgttaaaaatattatcactcggtagcattactaactggttatgttaattactggtttgctaagttaattatcagttgcattactattatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
44069710 |
tctaaactttgttaaaaatattatcactcggtagcattactaactggttatgttaattactggtttgctaagttaactatcggttgcattactgttatga |
44069809 |
T |
|
| Q |
101 |
gttatttaggttataggatagtttgatgttgctctgtcttggacttttctgtattcaattaggctttgtttggatcagtttctctcttatggtaggttcc |
200 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
44069810 |
gttagttaggttataggttagtttgatcttgctctgtcttggacttttctgtatttaaataggcttactttggattagtttctctcttatggtaagttcc |
44069909 |
T |
|
| Q |
201 |
agggccggcccaataattttcaatattcggtgaggcttaaatcaaattttataacacgggactttctt-atccgcatatgatgccnnnnnnnctttataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||| || ||||| ||| |||||||| |
|
|
| T |
44069910 |
agggccggcccaataattttcaatattcggtgaggcttaaatcaaatattataatacgggactttttttatctgcgtatgaggcctttttttctttataa |
44070009 |
T |
|
| Q |
300 |
aactgaagacagataaatttttgttggtgggccgaaaacaagggctttagtggatttacccttgggccggcccttgtaggttctcttctcaattaacata |
399 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44070010 |
aactgaagacaaataaatttgtgttggtgggccgaaagcaagagctttagtggtcttacccttgggccggcccgtgtaggttctcttctcaattaacata |
44070109 |
T |
|
| Q |
400 |
agtttaattgttaagaagctttagtactcaatccgtctctg |
440 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
44070110 |
agtttaatttctaaggagctttagtactcaatctgtctctg |
44070150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 44084088 - 44083778
Alignment:
| Q |
1 |
tctaaactttgttaaaaatattatcactcggtagcattactaactggttatgttaattactggtttgctaagttaattatcagttgcattactattatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
44084088 |
tctaaactttgttaaaaatattatcactcggtagcattactaactggttatgttaattactggtttgctaagttaactatcggttgcattactgttatga |
44083989 |
T |
|
| Q |
101 |
gttatttaggttataggatagtttgatgttgctctgtcttggacttttctgtattcaattaggctttgtttggatcagtttctctcttatggtaggttcc |
200 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
44083988 |
gttagttaggttataggttagtttgatcttgctctgtcttggacttttctgtattcaattaggcttactttggattagtttctctcttatggtaagttcc |
44083889 |
T |
|
| Q |
201 |
agggccggcccaataattttcaatattcggtgaggcttaaatcaaattttataacacgggactttctt-atccgcatatgatgccnnnnnnnctttataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| || ||| || ||||| ||| |||||||| |
|
|
| T |
44083888 |
agggccggcccaataattttcaatatttggtgaggcttaaatcaaatattataatacgggactttttttatctgcgtatgaggcctttttttctttataa |
44083789 |
T |
|
| Q |
300 |
aactgaagaca |
310 |
Q |
| |
|
||||||||||| |
|
|
| T |
44083788 |
aactgaagaca |
44083778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 47442470 - 47442538
Alignment:
| Q |
305 |
aagacagataaatttttgttggtgggccgaaaacaagggctttagtggatttacccttgggccggccct |
373 |
Q |
| |
|
||||||||||||||||||||||||| || ||| | | ||||||||||| |||||||| ||||||||| |
|
|
| T |
47442470 |
aagacagataaatttttgttggtggacctaaagctatggctttagtggccttacccttaagccggccct |
47442538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 16443331 - 16443773
Alignment:
| Q |
1 |
tctaaactttgttaaaaatattatcactcggtagcattactaactggttatgttaattactggtttgctaagttaattatcagttgcattactattatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
16443331 |
tctaaactttgttaaaaatattatcactcggtagcattactaactggttatgttaattactggtttgctaagttaactatcggttgcattactgttatga |
16443430 |
T |
|
| Q |
101 |
gttatttaggttataggatagtttgatgttgctctgtcttggacttttctgta-ttcaattaggctttgtttggatcagtttctctcttatggtaggttc |
199 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
16443431 |
gttagttaggttataggttagtttgatcttgctctgtcttggacttttctgtatttaaattaggcttactttggattagtttctctcttatggtaagttc |
16443530 |
T |
|
| Q |
200 |
cagggccggcccaataattttcaatattcggtgaggcttaaatcaaattttataacacgggac-tttcttatccgcatatgatgcc-nnnnnnnctttat |
297 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||| ||| ||||| || ||||| ||| |||||| |
|
|
| T |
16443531 |
cagggccggcccaataattttcaatanttggtgaggcttaaatcaaatattataatacgggactttttttatctgcgtatgaggccttttttttctttat |
16443630 |
T |
|
| Q |
298 |
aaaactgaagacagataaatttttgttggtgggccgaaaacaagggctttagtggatttacccttgggccggcccttgtaggttctcttctcaattaaca |
397 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16443631 |
aaaactgaagacaaataaatttgtgttggtgggccgaaagcaagagctttagtggtcttacccttgggccggcccgtgtaggttctcttctcaattaaca |
16443730 |
T |
|
| Q |
398 |
taagtttaattgttaagaagctttagtactcaatccgtctctg |
440 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
16443731 |
taagtttaatttctaaggagctttagtactcaatctgtctctg |
16443773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University