View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_high_1 (Length: 537)
Name: NF10225_high_1
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 38823295 - 38822772
Alignment:
| Q |
1 |
ctatcattcccttttttgagggaaaagaaaaaagaaagataggtaagtacatttatttttcttgatttcgtataaaaaaggaaatattttaacttaatta |
100 |
Q |
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| T |
38823295 |
ctatcattcccttttttgagggaaaagaaaaaagaaagataggtaagtacatttatttttcttgatttcgtataaaaaaggaaatattttaacttaatta |
38823196 |
T |
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| Q |
101 |
ccattttttatcataaccgagtcaaaaggggtagttctctttttgatttttgaaatttattagggagtattttatttccaaaatagctgaaaacattaat |
200 |
Q |
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| T |
38823195 |
ccattttttatcataaccgagtcaaaaggggtagttctctttttgatttttgaaatttattagggagtattttatttccaaaatagctgaaaacattaat |
38823096 |
T |
|
| Q |
201 |
tttgaggttgttttgtcnnnnnnnnnnnnnnnnnntttgaggctggggtgtgtgtgtatatatacatggttttcatttctgtgttgtctgcgtgttaagt |
300 |
Q |
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| T |
38823095 |
tttgaggttgttttgtcaaaaaaaaattaaaaaaatttgaggttgtggtgtgtgtgtatatatacatggttttcatttctgtgttgtctgcgtgttaagt |
38822996 |
T |
|
| Q |
301 |
ggattcaaagcagaagaagcaatgttgagagtctgtcgattacgagttggaatggcgattccaaaactttctgaactttccataattccatcactattct |
400 |
Q |
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| T |
38822995 |
ggattcaaagcagaagaagcaatgttgagagtctgtcgattacgagttggaatggcgattccaaaactttctgaactttccataattccatcactattct |
38822896 |
T |
|
| Q |
401 |
ccttctcttttacttcccattctcactcccaaatgcacactttttcctccacaaaaaccttccattttcactcaccttcttctcttcctctttcaccatt |
500 |
Q |
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| T |
38822895 |
ccttctcttttacttcccattctcactcccaaatgcacactttttcctccataaaaaccttccattttcactcaccttcttctcttcctctttcaccatt |
38822796 |
T |
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| Q |
501 |
tacttttatcatgtctccctatgc |
524 |
Q |
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| T |
38822795 |
tacttttatcatgtctccctatgc |
38822772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 307 - 505
Target Start/End: Complemental strand, 38817379 - 38817184
Alignment:
| Q |
307 |
aaagcagaagaagcaatgttgagagtctgtcgattacgagttggaatggcgattccaaaactttctgaactttccataattccatcactattctccttct |
406 |
Q |
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||||||||||||||||||||||||| |||| ||| || |||||| | ||||||||||||| ||| |||||||| ||||| ||| | ||||| |||| |
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| T |
38817379 |
aaagcagaagaagcaatgttgagagcttgtcaatttcgcgttggattaccgattccaaaactctcttcactttccactattccttcaatcttctctttct |
38817280 |
T |
|
| Q |
407 |
cttttacttcccattctcactcccaaatgcacactttttcctccacaaaaaccttccattttcactcaccttcttctcttcctctttcaccatttactt |
505 |
Q |
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| T |
38817279 |
cttttccttcacattctcattccaaaatccacactttttcctacaaaaaacccttccattttcact---ctccttctcttcctctttcaccctttactt |
38817184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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