View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_high_14 (Length: 358)
Name: NF10225_high_14
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 44694917 - 44694588
Alignment:
| Q |
18 |
gaattcataggtggaactacagtacttgaatagattcactgggattactggatgcattggattattaggaaacgaagaaggagcatatgaccctgttgta |
117 |
Q |
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| T |
44694917 |
gaattcataggtggaactacagtacttgaatagattcactgggattactggatgcattggattattaggaaacgaagaaggagcatatgaccctgttgta |
44694818 |
T |
|
| Q |
118 |
aaattatcaggccttttaggaacaagcattctgtccctgggagccaatgttgccttgcacataccaacaagatcaataaccaagttgactgctggcttcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694817 |
aaattatcaggccttttaggaacaagcattctgtccctgggagccaatgttgccttgcacataccaacaagatcaataaccaagttgactgctggcttcg |
44694718 |
T |
|
| Q |
218 |
gcttaaacactgccttccttgaagcttcattgaccttgtaagatatatccatcaaaaactactggtgatctataaactaactttaggatgtaattaatcg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694717 |
gcttaaacactgccttccttgaagcttcattgaccttgtaagatatatccatcaaaaactactggtgatctataaactaactttaggatgtaattaatcg |
44694618 |
T |
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| Q |
318 |
ttactgcttagtgttctgctactgtttctt |
347 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44694617 |
ttactgcttagtgttctgctactgtttctt |
44694588 |
T |
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