View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_high_2 (Length: 526)
Name: NF10225_high_2
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 21 - 516
Target Start/End: Complemental strand, 8740310 - 8739814
Alignment:
| Q |
21 |
tcatcagattttatcactgaacgagctgaaaaagatgaaaaacattaacaaagtcgaattactttaagaaaataatgatagggtttgtttggtttttacc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8740310 |
tcatcagattttatcactgaacgagctgaaaaagatgaaaaacattaacaaggttgaattactttaagaaaataatgatagggtttgtttggtttttacc |
8740211 |
T |
|
| Q |
121 |
tggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtatcttatttttaaggtagtac-tt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
8740210 |
tggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaggtatcttatttttaaggtagtacatt |
8740111 |
T |
|
| Q |
220 |
aacaagctcttgatctgtaggacagaatctaagtccaagaacaaaatcaatagttggaggaaaagaggttgtcatttgtctggaagactccccttcatca |
319 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8740110 |
aacaagctcttcatctgtaggacagaatctaagtccaagaacaaaatcaatagttggaggaaaagaggttgtcatttgtctggaagactccccttcatca |
8740011 |
T |
|
| Q |
320 |
cacaccattgtataattttcatcttcaccttttttctcggcatttttaatcaagtgacataagacatgagtcctctacaaaattttgcagggtaatcaaa |
419 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8740010 |
cacaccattgtataattttcctcttcaccttttttctcggcatttttaatcaagtgacataagacatgagtcctctacaaaattttggagggtaatcaaa |
8739911 |
T |
|
| Q |
420 |
atttattaaagcagaaattaatatttatgaaagtagtactaataattttacaacaatgtcaaaattgttcaatttaatatttgtgatgtctctgctt |
516 |
Q |
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| T |
8739910 |
atttattaaagcggaaattaatatttatgaaagtagtactaataattttacaacaatgtcaaaattgttcaatttaatatttgtgatgtctcggctt |
8739814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 115 - 424
Target Start/End: Complemental strand, 8723562 - 8723256
Alignment:
| Q |
115 |
tttacctggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtatcttatttttaaggtag |
214 |
Q |
| |
|
|||||||||||| ||||| |||||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||| |
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| T |
8723562 |
tttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaagcaacttatttctaaggtag |
8723463 |
T |
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| Q |
215 |
tacttaacaagctcttgatctgtaggacagaatctaagtccaagaacaaaatcaatagttggaggaaaagaggttgtcatttgtctggaagactcccctt |
314 |
Q |
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| T |
8723462 |
tgattaactagctcttcacctgttggacaaaatctgaatccaa---cataatgaagaatgggaggaaatgagggtgtcatttgtctgctaggctcccctt |
8723366 |
T |
|
| Q |
315 |
catcacacaccattgtataattttcatcttcaccttttttctcggcatttttaatcaagtgacataagacatgagtcctctacaaaattttgcagggtaa |
414 |
Q |
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||||||||| |||||||| |||||| ||||| |||||| ||||||| ||||| |||||| ||||||| ||| ||||||||||||||||||| || |||| |
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| T |
8723365 |
catcacacatcattgtatcattttcctcttcgccttttatctcggcttttttcatcaagcgacataaaacaaaagtcctctacaaaattttggagcgtaa |
8723266 |
T |
|
| Q |
415 |
tcaaaattta |
424 |
Q |
| |
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|||| ||||| |
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| T |
8723265 |
tcaacattta |
8723256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 8705211 - 8705018
Alignment:
| Q |
44 |
agctgaaaaagatgaaaaacattaacaaagtcgaattactttaagaaaataatgatagggtttgtttggttttt-acctggtaagtcccaaggttcgtac |
142 |
Q |
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|
||||||||||||||||||||||||| || || | ||| | | |||||||||||| |||||||||||| ||||| ||||||||||||||||||||| || |
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| T |
8705211 |
agctgaaaaagatgaaaaacattaaaaaggttgcatttttatgagaaaataatga-agggtttgtttgtttttttacctggtaagtcccaaggttcatag |
8705113 |
T |
|
| Q |
143 |
ttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtatcttatttttaaggtagtacttaacaagctcttgatctgt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||| || |||||||||| |||||| |
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| T |
8705112 |
ttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgt |
8705018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 8690867 - 8690746
Alignment:
| Q |
116 |
ttacctggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtatcttatttttaaggtagt |
215 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| || |||| |
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| T |
8690867 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagt |
8690768 |
T |
|
| Q |
216 |
acttaacaagctcttgatctgt |
237 |
Q |
| |
|
|| |||||||||| |||||| |
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| T |
8690767 |
ggtttacaagctcttcatctgt |
8690746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 8722247 - 8722095
Alignment:
| Q |
85 |
taagaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaa |
184 |
Q |
| |
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|||||||||||| || |||||||||| | |||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||| |||| |
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| T |
8722247 |
taagaaaataataatgaggtttgtttgatatttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactct |
8722148 |
T |
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| Q |
185 |
tcattaccaagtatcttatttttaaggtagtacttaacaagctcttgatctgt |
237 |
Q |
| |
|
||||| ||||||| ||| ||| | || ||||| || ||||||||||||||||| |
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| T |
8722147 |
tcattgccaagtaacttgtttctgagatagtagtttacaagctcttgatctgt |
8722095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 423
Target Start/End: Complemental strand, 8691382 - 8691266
Alignment:
| Q |
307 |
ctccccttcatcacacaccattgtataattttcatcttcaccttttttctcggcatttttaatcaagtgacataagacatgagtcctctacaaaattttg |
406 |
Q |
| |
|
||||||||||||||| | |||| ||| | |||| |||||| |||||||||| || || || |||||| |||| || ||| ||||||||||||||||||| |
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| T |
8691382 |
ctccccttcatcacatatcattctatcaatttcctcttcagcttttttctcagctttcttcatcaagcgacacaaaacaaaagtcctctacaaaattttg |
8691283 |
T |
|
| Q |
407 |
cagggtaatcaaaattt |
423 |
Q |
| |
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||| ||||||| |||| |
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|
| T |
8691282 |
gaggataatcaacattt |
8691266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 8738643 - 8738549
Alignment:
| Q |
121 |
tggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtatcttatttttaaggtagt |
215 |
Q |
| |
|
|||||| |||||||| || || |||| ||||||||||| ||||| |||||||| ||| |||| |||||||||||| ||| || || ||||||| |
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| T |
8738643 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagt |
8738549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 8723669 - 8723637
Alignment:
| Q |
21 |
tcatcagattttatcactgaacgagctgaaaaa |
53 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |
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|
| T |
8723669 |
tcatcagattttatcaccgaacgagctgaaaaa |
8723637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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