View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10225_high_20 (Length: 289)

Name: NF10225_high_20
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10225_high_20
NF10225_high_20
[»] chr3 (4 HSPs)
chr3 (21-203)||(14174504-14174686)
chr3 (21-171)||(951896-952046)
chr3 (202-253)||(14174409-14174458)
chr3 (258-289)||(951789-951820)
[»] scaffold0007 (4 HSPs)
scaffold0007 (71-203)||(258428-258560)
scaffold0007 (216-253)||(258618-258655)
scaffold0007 (21-56)||(258392-258427)
scaffold0007 (258-289)||(258692-258723)
[»] chr7 (2 HSPs)
chr7 (21-203)||(40723437-40723606)
chr7 (202-253)||(40723652-40723701)
[»] chr4 (2 HSPs)
chr4 (21-61)||(10714542-10714582)
chr4 (21-61)||(10928312-10928352)
[»] chr2 (1 HSPs)
chr2 (139-194)||(2193526-2193581)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 14174686 - 14174504
Alignment:
Q  21 acaggtatatctagccgcgaaaattatgattcaactttgattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctct 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174686 acaggtatatctagcagcgaaaattatgattcaactttgattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctct 14174587  T
Q  121 ttcaatatgtttctataactatgctgaaaaacattttgaatattacttttcttcattcaaatgggaatcctttatatcttttg 203  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174586 ttcaatctatttctataactatgctgaaaaacattttgaatattacttttcttcattcaaatgggaatcctttatatcttttg 14174504  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 952046 - 951896
Alignment:
Q  21 acaggtatatctagccgcgaaaattatgattcaactttgattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctct 120  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||    
T  952046 acagatatatctagcagcgaaaattatgattcaactttgattaattttgaacttaaatctaataaaaaacattatactttgtggaaggtgttatttctct 951947  T
Q  121 ttcaatatgtttctataactatgctgaaaaacattttgaatattacttttc 171  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  951946 ttcaatttgtttctataactatgctgaaaaacattttgaatattacttttc 951896  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 14174458 - 14174409
Alignment:
Q  202 tgagagataaattattatccccaaattttgaagttgattatctaaaatctaa 253  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  14174458 tgagagataaatt--tatccccaaattttgaagttgattatctaaaatctaa 14174409  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 289
Target Start/End: Complemental strand, 951820 - 951789
Alignment:
Q  258 gtttaaaaattattgtaatcaccatggatctc 289  Q
    ||||||||||||||||||||||||||||||||    
T  951820 gtttaaaaattattgtaatcaccatggatctc 951789  T

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Target: scaffold0007 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 258428 - 258560
Alignment:
Q  71 acttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttgaatattactttt 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  258428 acttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatctgtttttataactatgctgaaaaacattttgaatattactttt 258527  T
Q  171 cttcattcaaatgggaatcctttatatcttttg 203  Q
    |||||||||||||||||||||||||||||||||    
T  258528 cttcattcaaatgggaatcctttatatcttttg 258560  T

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Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 258618 - 258655
Alignment:
Q  216 ttatccccaaattttgaagttgattatctaaaatctaa 253  Q
    ||||||||||||||||||||||||||||||||||||||    
T  258618 ttatccccaaattttgaagttgattatctaaaatctaa 258655  T

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Target: scaffold0007; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 258392 - 258427
Alignment:
Q  21 acaggtatatctagccgcgaaaattatgattcaact 56  Q
    ||||||||||||||| ||||||||||||||||||||    
T  258392 acaggtatatctagcagcgaaaattatgattcaact 258427  T

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Target: scaffold0007; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 289
Target Start/End: Original strand, 258692 - 258723
Alignment:
Q  258 gtttaaaaattattgtaatcaccatggatctc 289  Q
    ||||||||||||||||||||||||||||||||    
T  258692 gtttaaaaattattgtaatcaccatggatctc 258723  T

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Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 40723437 - 40723606
Alignment:
Q  21 acaggtatatctagccgcgaaaattatgattcaactttgattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctct 120  Q
    ||||||||||||||||||||||||||||||||||||              ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  40723437 acaggtatatctagccgcgaaaattatgattcaact--------------acttaagtctgttaaaaaacattatactttgtggaag-tgttatttctct 40723521  T
Q  121 ttcaatatgtttctataactatgctgaaaa--acattttgaatattacttttcttcattcaaatgggaatcctttatatcttttg 203  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  40723522 ttcaatctgtttctataactatgctgaaaaaaacattttgaatattacttttcttcattaaaatggaaatcctttatatcttttg 40723606  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 40723652 - 40723701
Alignment:
Q  202 tgagagataaattattatccccaaattttgaagttgattatctaaaatctaa 253  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  40723652 tgagagataaatt--tatccccatattttgaagttgattatctaaaatctaa 40723701  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 10714582 - 10714542
Alignment:
Q  21 acaggtatatctagccgcgaaaattatgattcaactttgat 61  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  10714582 acaggtatatctagcagcgaaaattatgattcaactttgat 10714542  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 10928352 - 10928312
Alignment:
Q  21 acaggtatatctagccgcgaaaattatgattcaactttgat 61  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  10928352 acaggtatatctagcagcgaaaattatgattcaactttgat 10928312  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 2193581 - 2193526
Alignment:
Q  139 ctatgctgaaaaacattttgaatattacttttcttcattcaaatgggaatccttta 194  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||  ||||||||||    
T  2193581 ctatgcagaaaaacattttgaattctacttctcttcattcaaatatgaatccttta 2193526  T

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