View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10225_high_26 (Length: 250)

Name: NF10225_high_26
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10225_high_26
NF10225_high_26
[»] chr5 (1 HSPs)
chr5 (11-211)||(34936656-34936870)
[»] chr1 (2 HSPs)
chr1 (47-153)||(17404622-17404728)
chr1 (58-148)||(32730188-32730278)
[»] chr7 (3 HSPs)
chr7 (57-148)||(18132650-18132741)
chr7 (57-148)||(18144437-18144528)
chr7 (155-196)||(29802043-29802084)
[»] chr2 (1 HSPs)
chr2 (160-199)||(20213787-20213826)
[»] chr3 (1 HSPs)
chr3 (155-199)||(53505105-53505149)
[»] chr8 (1 HSPs)
chr8 (155-196)||(18008986-18009027)
[»] chr6 (1 HSPs)
chr6 (155-199)||(2013467-2013511)
[»] chr4 (1 HSPs)
chr4 (155-199)||(54846172-54846216)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 34936870 - 34936656
Alignment:
Q  11 cagagataccttcgaagagatatgcttgtgcctaacgtcatcagcaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgc 110  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34936870 cagagataccttcgaagagatatgcttgtgcctaacgtcattaacaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacacctcgc 34936771  T
Q  111 accgagtaacgatgattgggatcaagcaaccacttccacttg--------------tacaaagcaatgttatgtaacaaagcagaacactccctcacact 196  Q
    || ||||||| |||||| ||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||    
T  34936770 actgagtaacaatgattaggatcaagcaaccacttccacttgtcaagaacatgctctacaaagcaatgttatgtaacaaagcagaacactccctcacact 34936671  T
Q  197 ctcacacacccccac 211  Q
    ||||||| |||||||    
T  34936670 ctcacacccccccac 34936656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 17404728 - 17404622
Alignment:
Q  47 gtcatcagcaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttc 146  Q
    ||||||||| ||||||||||||| | || |||| ||||||||||||||| |||| ||  ||||||||||||||| ||||    ||||||||||||| |||    
T  17404728 gtcatcagcgagattcctaaccataggtacatctgtcgtagtaaaaaagtgatatacgcctcgcaccgagtaaccatgaaaaagatcaagcaaccatttc 17404629  T
Q  147 cacttgt 153  Q
    |||||||    
T  17404628 cacttgt 17404622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 32730278 - 32730188
Alignment:
Q  58 gattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttcca 148  Q
    |||||||||||||  ||||||| || ||||||||||||||||| ||| ||||||||||||||| |||| | ||||| |||||||| |||||    
T  32730278 gattcctaaccacgggttcatcagttgtagtaaaaaagcgatatacacctcgcaccgagtaaccatgaataggatcgagcaaccatttcca 32730188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 18132650 - 18132741
Alignment:
Q  57 agattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttcca 148  Q
    ||||||||||||||| || |||| || |  ||||||||||| |||||| |||||||||||||||  ||| | ||||| |||||||| |||||    
T  18132650 agattcctaaccacaggtacatctgttgccgtaaaaaagcggtagacacctcgcaccgagtaaccgtgaataggatcgagcaaccatttcca 18132741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 18144437 - 18144528
Alignment:
Q  57 agattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttcca 148  Q
    ||||||||||||||| || |||| || |  ||||||||||| |||||| |||||||||||||||  ||| | ||||| |||||||| |||||    
T  18144437 agattcctaaccacaggtacatctgttgccgtaaaaaagcggtagacacctcgcaccgagtaaccgtgaataggatcgagcaaccatttcca 18144528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 29802084 - 29802043
Alignment:
Q  155 caaagcaatgttatgtaacaaagcagaacactccctcacact 196  Q
    |||| ||||||||| |||||||||| ||||||||||||||||    
T  29802084 caaaacaatgttatttaacaaagcataacactccctcacact 29802043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 20213787 - 20213826
Alignment:
Q  160 caatgttatgtaacaaagcagaacactccctcacactctc 199  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  20213787 caatgttatgtaacaaagcagaacactccctcagactctc 20213826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 53505149 - 53505105
Alignment:
Q  155 caaagcaatgttatgtaacaaagcagaacactccctcacactctc 199  Q
    |||| |||||||| ||||||||||| |||||||||||||||||||    
T  53505149 caaaacaatgttaagtaacaaagcacaacactccctcacactctc 53505105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 18009027 - 18008986
Alignment:
Q  155 caaagcaatgttatgtaacaaagcagaacactccctcacact 196  Q
    |||| |||||||||||||||||||||| ||||||| ||||||    
T  18009027 caaaacaatgttatgtaacaaagcagagcactcccgcacact 18008986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 2013511 - 2013467
Alignment:
Q  155 caaagcaatgttatgtaacaaagcagaacactccctcacactctc 199  Q
    |||| ||| ||||||||||||| ||||||||||||||| ||||||    
T  2013511 caaaacaacgttatgtaacaaaacagaacactccctcatactctc 2013467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 54846172 - 54846216
Alignment:
Q  155 caaagcaatgttatgtaacaaagcagaacactccctcacactctc 199  Q
    |||| ||||||||||||  ||| ||||||||||||||||||||||    
T  54846172 caaaacaatgttatgtagtaaaacagaacactccctcacactctc 54846216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University