View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_high_37 (Length: 213)
Name: NF10225_high_37
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_high_37 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 29001061 - 29000849
Alignment:
| Q |
1 |
agttgagtttagttgattgtacattctttttgggtagannnnnnnnggatttgaaactttgaatcatgaacaataacaatagagggagatatccacctgg |
100 |
Q |
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| T |
29001061 |
agttgagtttagttgattgtacattctttttgggtagaatttttttggatttgaaactttgaatcatgaacaataacaatagagggagatatccacctgg |
29000962 |
T |
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| Q |
101 |
gattgggttaggacgaggtagtggtggtggtggtttgaactcaaacccgaacaatgcaaacgccgggtttcaacagagaccacattatcgacaacaacag |
200 |
Q |
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| T |
29000961 |
gattgggttaggacgaggtagtggtggtggtggtttgaactcaaacccgaacaatgcaaacgccgggtttcaacagagaccacattatcaacaacaacag |
29000862 |
T |
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| Q |
201 |
tatgtgcagaggc |
213 |
Q |
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||||||||||||| |
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| T |
29000861 |
tatgtgcagaggc |
29000849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 28990622 - 28990406
Alignment:
| Q |
1 |
agttgagtttagttgattgtacattctttttgggtagannnnnnnnggatttgaaactttgaatcatgaacaataacaatagagggagatatccacctgg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28990622 |
agttgagtttagttaattgtacattctttttgggtagaaatttttcggatttgaaactttgaatcatgaacaataacaatagagggagatatccacctgg |
28990523 |
T |
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| Q |
101 |
gattgggttaggacgaggtag------------------tggtggtggtggtttgaactcaaacccgaacaatgcaaacgccgggtttcaacagagacca |
182 |
Q |
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| T |
28990522 |
gattgggttaggacgaggtagtggtagtggtagtggtggtggtggtggtggtttgaactcaaacccgaacaatgcgaacgccgggtttcaacagagacca |
28990423 |
T |
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| Q |
183 |
cattatcgacaacaaca |
199 |
Q |
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| T |
28990422 |
cattatcaacaacaaca |
28990406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 28977092 - 28976959
Alignment:
| Q |
1 |
agttgagtttagttgattgtacattctttttgggtagannnnnnnnggatttgaaactttgaatcatgaacaataacaatagagggagatatccacctgg |
100 |
Q |
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|||||||||||||| |||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28977092 |
agttgagtttagtttattgtacattatttttgggttgaaattttttggatttgaaacttcgaatcatgaacaataacaatagagggagatatccacctgg |
28976993 |
T |
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| Q |
101 |
gattgggttaggacgaggtagtggtggtggtggt |
134 |
Q |
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| T |
28976992 |
gattgggttaggacgaggtggtagtggtggtggt |
28976959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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