View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_high_5 (Length: 442)
Name: NF10225_high_5
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Original strand, 34936225 - 34936652
Alignment:
| Q |
17 |
accaatattcaaaagaaattaacaacacaaaatgaaatatattaacgaaaaagtatttctaccaagcacatgatagaaatcaagagtacaaatatttcat |
116 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34936225 |
accaatattaaaaagaaactaacaacacaaaatgaaatatattaacgaaaaagtatttctaccaagcacatgatagaaatcaagagtacaaatatttcat |
34936324 |
T |
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| Q |
117 |
tgcataatcaaaacgcggaactaaaaaccaacaagctggnnnnnnnnn--ctaagacaaaaccatatataaaataggattacgacatcaaagctggagat |
214 |
Q |
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| T |
34936325 |
tgcataatcaaaacgcggaactaaaaaccaacaagctggaaaaaaaaaaactaagacaaaaccatatataaaataggattacgacatcaaagctggagat |
34936424 |
T |
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| Q |
215 |
cataagctaaataaaagatttttatcttcaaccatcaaaatgataaacgtttaactttatcgaacaaagttaaattagaaatttccatctttaaccacca |
314 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34936425 |
cataagctaaattaaagatttttatcttcaaccatcaaaatgataaacgtttaactttatcgaacaaagttaaattagaaatttccatcttcaaccacca |
34936524 |
T |
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| Q |
315 |
aaatgtaaacatatgactttgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgatttggccgtgaactagg |
414 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34936525 |
aaatataaacatatgactttgttctggcatgataactgtgttggggaaattcggttaaggattaaatttccccgcctatttgatttggccgtgaaccagg |
34936624 |
T |
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| Q |
415 |
agagcacagtggaggagatggagaggct |
442 |
Q |
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| T |
34936625 |
agaacacggtggaggagatggagaggct |
34936652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 440
Target Start/End: Original strand, 17404391 - 17404497
Alignment:
| Q |
334 |
tgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgatttggccgtgaactaggagagcacagtggaggagat |
433 |
Q |
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| T |
17404391 |
tgttctggcatgatagctgggttgggggaatttcgttgaggaacaaatttccccgcctatttgattcggccgtgaaccagaagtcctcggtggaggagat |
17404490 |
T |
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| Q |
434 |
ggagagg |
440 |
Q |
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||||||| |
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| T |
17404491 |
ggagagg |
17404497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 409
Target Start/End: Original strand, 32729950 - 32730027
Alignment:
| Q |
332 |
tttgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgatttggccgtgaa |
409 |
Q |
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| T |
32729950 |
tttgttctggcacgacaactgggtcggggaaattcagttgatgaacaaatttcctcgcctatttgatttggccgtgaa |
32730027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 403
Target Start/End: Original strand, 16586889 - 16586953
Alignment:
| Q |
339 |
tggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgatttggc |
403 |
Q |
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| T |
16586889 |
tggcatgataattgggtaggggaaattcctttgcggattaaatttccccgcctttttgatctggc |
16586953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 42679286 - 42679328
Alignment:
| Q |
239 |
tcttcaaccatcaaaatgataaacgtttaactttatcgaacaa |
281 |
Q |
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| T |
42679286 |
tcttcaaccatcaaaaagataaacgcttaactttatcgaacaa |
42679328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 434
Target Start/End: Complemental strand, 11881541 - 11881461
Alignment:
| Q |
354 |
gttggggaaattccgttaaggattaaatttccccgcctatttgatttggccgtgaactaggagagcacagtggaggagatg |
434 |
Q |
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| T |
11881541 |
gttggggtagttcctttgagtattaaatttccgcgcctattcgatttggccatgaacaaagagagtagggtggaggagatg |
11881461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 18132975 - 18132910
Alignment:
| Q |
333 |
ttgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgat |
398 |
Q |
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| T |
18132975 |
ttgttctggcatgataactgggtgggggaaattccgtcgaggaataaatttcctcgactatttgat |
18132910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 18144762 - 18144697
Alignment:
| Q |
333 |
ttgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgat |
398 |
Q |
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| T |
18144762 |
ttgttctggcatgataactgggtgggggaaattccgtcgaggaataaatttcctcgactatttgat |
18144697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 21376461 - 21376409
Alignment:
| Q |
354 |
gttggggaaattccgttaaggattaaatttccccgcctatttgatttggccgt |
406 |
Q |
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| T |
21376461 |
gttggggaaattccgctaaaacttaaatttccccgcctatttgatttgtccgt |
21376409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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