View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_high_6 (Length: 442)
Name: NF10225_high_6
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 45342483 - 45342924
Alignment:
| Q |
1 |
ctaccaattcaaaacaagaagatacatggttcctcgactccggttgtagcaatcacatgtgcggaaacaagcagtggttttctaccattgatgaagattt |
100 |
Q |
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| T |
45342483 |
ctaccaattcaaaacaagaagatatatggtttctcgactccggttgtagcaatcacatgtgcggaaacaagcagtggttttctaccattaatgaagattt |
45342582 |
T |
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| Q |
101 |
caaacactcggtaaagctcggcaacgattccaaaatggcggtaatgggaaaagggaacattcgacttgagatcaatggcgcaattcaagtagtcactgat |
200 |
Q |
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| T |
45342583 |
caaacactcggtaaagctcggcaacgattccaaaatggtggtaatgggaaaagggaacatttgacttgagatcaatggtgcaattcaagtagtcactgat |
45342682 |
T |
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| Q |
201 |
gtctactatgttccagagttgaaaaataacttactgagtgtaggccagcttcaagaaaaaggattaactttacttatacaaaatggaacatgcaagttat |
300 |
Q |
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| T |
45342683 |
gtctactatgttccaaagttgaaaaataacttactgaatgtaggccaacttcaagaaaaaggattaactttacttatacaaaatgaaacatgcaagttat |
45342782 |
T |
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| Q |
301 |
tccatccaagaagaggattgctcatgcaaacaaaaatgacggcaaatcgaatgtttgtgctgctggctagtgtggtacttcaagagacctcaacgttcct |
400 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
45342783 |
tccatcaaagaagaggattgttcatgcaaacaaaaatgacagcaaatcgaatgtttgtgctgctggctagtgtggtgcttcaagagacctcaacattcct |
45342882 |
T |
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| Q |
401 |
acaattagctactgaagatagctcacaattgtggcatcgtag |
442 |
Q |
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| T |
45342883 |
acaattagctactgaagatagcttacaattgtggcatcgtag |
45342924 |
T |
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