View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_1 (Length: 604)
Name: NF10225_low_1
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 128 - 449
Target Start/End: Complemental strand, 15328707 - 15328387
Alignment:
| Q |
128 |
ggcttagagggtcaaaactcaaatctgatattaaaatgcctcaaatcctttctccacggcccatgtaggagaaaacaaacgtggatgcaatggaatgaaa |
227 |
Q |
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| T |
15328707 |
ggcttaaagggtcaaaactcaaatctgatattaaaatgcctcaaatcctttccccacagtccatgtaggaaaaaacaaacgtggatgcaatggaatgaaa |
15328608 |
T |
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| Q |
228 |
caattagagttccaagtccataactttaaagcccttgtattg-ttttcccctccaactatcttaatttagcattcatcatcaaacttctttgctacttgg |
326 |
Q |
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| T |
15328607 |
caattagagttccaagtccttaactttaaagcccttatattgtttttcccctccaactatcttaatttagcattcatcatcaaacttctttgctacttag |
15328508 |
T |
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| Q |
327 |
tatgaatgatatcatatgtgacaagacaaagcatgtaaagtgtttctcacctt-gattttctgtgatcttcaaatgttaccaattaccaaatatgagaaa |
425 |
Q |
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| T |
15328507 |
tatgaatgatatcatacgtgacaagacaaagcacgtaaagtgtttttcactttctaattgct-tca--gtcaaatgttaccaattaccaaatatgacaaa |
15328411 |
T |
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| Q |
426 |
catttacaaagtgatcttcaaaat |
449 |
Q |
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| T |
15328410 |
cattttcaaagtgatcttcaaaat |
15328387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 555
Target Start/End: Complemental strand, 15328318 - 15328281
Alignment:
| Q |
518 |
gtatgtaggcagtttgggtcattgttatgtgttgttga |
555 |
Q |
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| T |
15328318 |
gtatgtaggcagtttgggtcattgttatgtgttgttga |
15328281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 15328732 - 15328700
Alignment:
| Q |
90 |
tagaacaccaaattcatgatattaaggcttaaa |
122 |
Q |
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| T |
15328732 |
tagaacaccaaattcatgatgttaaggcttaaa |
15328700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 12655581 - 12655643
Alignment:
| Q |
91 |
agaacaccaaattcatgatattaaggcttaaatgaggggcttagagggtcaaaactcaaatctgat |
156 |
Q |
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| T |
12655581 |
agaacaccaaattcttgacattaaggcttaaatgaggggattcgagg---ataactcaaatctgat |
12655643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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