View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_12 (Length: 390)
Name: NF10225_low_12
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 47242790 - 47242432
Alignment:
| Q |
18 |
aatcaccccaccaaaggccatagatttctgccaaatcactgataacacatatgatcttgacgaggtaatgtagtattcttttatctggtcttgaatcaaa |
117 |
Q |
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| T |
47242790 |
aatcaccccaccaaaggccatagatttctgccaaatcactgataacacatatgatcttgacgaggtaatgtagtattcttttatctggtcttgaatcaaa |
47242691 |
T |
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| Q |
118 |
ttttgttcttgattgaattattttatttcannnnnnnnctttcttgtattgctttgtttctcatgtatgttgtttgttgttaatataggttttgaagatg |
217 |
Q |
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| T |
47242690 |
ttttgttcttgattgaataattttatttcatttttt---tttcttgtattgctttgtttctcatgtatgttgtttgttgttaatataggttttgaagatg |
47242594 |
T |
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| Q |
218 |
gaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtaaatttgaatatcta |
317 |
Q |
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| T |
47242593 |
gaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtgaatttgaatatcta |
47242494 |
T |
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| Q |
318 |
aagccttgttgaaatgaagttaattggactaattatgtttatttgcacttgctgtgattcat |
379 |
Q |
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| T |
47242493 |
aagccttgttgaaatgaagttaattggactaattctgtttattttcacttgctgtgattcat |
47242432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 364
Target Start/End: Complemental strand, 47249041 - 47248893
Alignment:
| Q |
215 |
atggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtaaatttgaatat |
314 |
Q |
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| T |
47249041 |
atggaagctgacatacttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggacatttattactgtaaagttgaatat |
47248942 |
T |
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| Q |
315 |
ctaaagccttgttgaaatgaagttaattggactaattatgtttatttgca |
364 |
Q |
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| T |
47248941 |
ataaatccttgctgaaatgaa-ataattggactgaccatgtttatgtgca |
47248893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 378
Target Start/End: Complemental strand, 47253871 - 47253696
Alignment:
| Q |
203 |
taggttttgaagatggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgt |
302 |
Q |
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| T |
47253871 |
taggttattaagatggaagctgatattcttaagtcattgaattttgaaatgggcaaccctcatgttaacacttttctcaagtaaggactgttaatattgt |
47253772 |
T |
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| Q |
303 |
aaatttgaatatctaaagccttgttgaaatgaagttaattggactaattatgtttatttgcacttgctgtgattca |
378 |
Q |
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| T |
47253771 |
taatttcaatatctaaagcctaattgaaatgaagttaattggattaattgtgtttatgtgcaattactgtgtttca |
47253696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 47249217 - 47249154
Alignment:
| Q |
22 |
accccaccaaaggccatagatttctgccaaatcactgataacacatatgatcttgacgaggtaa |
85 |
Q |
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| T |
47249217 |
accccaccaaaggcagtggatttctgccaaattactgataacacctatgacctggaagaggtaa |
47249154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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