View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_13 (Length: 385)
Name: NF10225_low_13
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 11842993 - 11843340
Alignment:
| Q |
18 |
attagcatggttaacacttaatacaaatcataaataagctgcttctaagatccacaattaaacttcctctaaacaaatttacagttatacttaattagct |
117 |
Q |
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| T |
11842993 |
attagcatggttaacacttaatacaaatcataaataagctgcttctaagatccacaattaaacttcctctaaacaaatttacagttaaacttaattagct |
11843092 |
T |
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| Q |
118 |
ctaaacaatgattctgcaatttacaatatttcatatcatcttagctctaatattccccatattttctccattaacaacagcacaacaagaagatggaatc |
217 |
Q |
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| T |
11843093 |
ctacacaatgattctgcaatttacaatatttcatatcatcttagctctaatattccccatatttcctccattaacatcagcacaacaagaagatggaatc |
11843192 |
T |
|
| Q |
218 |
atagcacaacaaggttgtaattcatcatgcggaacaatgtcaatccctttcccattcggaatgaaagaacctcgttgttatgcagacaagtggttcgaaa |
317 |
Q |
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| T |
11843193 |
atagcacaacaaggttgtaattcaacatgcggaacaatgtcaatccctttcccattcggaatgaaagaacctcgttgttatgcagacaagtggttcgaaa |
11843292 |
T |
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| Q |
318 |
tagagtgcaaattagacaacaattctcaaaatccaaaaccatatttga |
365 |
Q |
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| T |
11843293 |
tagagtgcaaattagacaacagttctcaaaatccaaaaccatatttga |
11843340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 98 - 365
Target Start/End: Original strand, 11847755 - 11848022
Alignment:
| Q |
98 |
acagttatacttaattagctctaaacaatgattctgcaatttacaatatttcatatcatcttagctctaatattccccatattttctccattaacaacag |
197 |
Q |
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| T |
11847755 |
acagttaaacttaattagctctaaacaatgattctgcagtttacaatatttcatatcatcttagctctaatattccccatatttcctccattaacatcag |
11847854 |
T |
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| Q |
198 |
cacaacaagaagatggaatcatagcacaacaaggttgtaattcatcatgcggaacaatgtcaatccctttcccattcggaatgaaagaacctcgttgtta |
297 |
Q |
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| T |
11847855 |
cacaacaagaagatggaatcatagcacagcaaggttgtaattcaacatgcggaacaatgtcaattccttttccattcggaatgaaagaacctcgttgtta |
11847954 |
T |
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| Q |
298 |
tgcagacaagtggttcgaaatagagtgcaaattagacaacaattctcaaaatccaaaaccatatttga |
365 |
Q |
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| T |
11847955 |
tgcagacaaatggtttgaaatagagtgcaaattagacaacaattctcaaaatccaaaaccatatttga |
11848022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 11847730 - 11847766
Alignment:
| Q |
46 |
cataaataagctgcttctaagatccacaattaaactt |
82 |
Q |
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| T |
11847730 |
cataaataagctgcttctaagatccacagttaaactt |
11847766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 26885193 - 26885272
Alignment:
| Q |
257 |
tcaatccctttcccattcggaatgaaagaacctcgttgttatgcagacaagtggttcgaaatagagtgcaaattagacaa |
336 |
Q |
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| T |
26885193 |
tcaattccttttccatttggaatggaagaaccacattgttatgcaggcatgtggttcgaaatagagtgtaaatttgacaa |
26885272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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