View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_17 (Length: 347)
Name: NF10225_low_17
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 1503784 - 1503439
Alignment:
| Q |
1 |
tagacatgtgataagttatagatatacatattcaaaccgactttatatttttatcgttatatttaatgtgtgtaagtttcatcgccgtattctttcaaaa |
100 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1503784 |
tagacatgtgataagttatggatatacatattcgaaccgactttatatttttatcgttatatttaatgtgtgtaagtttcatcgccgtattctttcaaaa |
1503685 |
T |
|
| Q |
101 |
gacattataaatataaagcattagacaaggcacctaaactagaaaagttagacacgtagagtagttcacggtttcacttnnnnnnnnccatacacatcac |
200 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1503684 |
gacattataaatgtaaagcattagagaaggcacctaaactagaaaagttagacacgtagagtagttcacggtttcacttaaaaaaaaccatacacatcac |
1503585 |
T |
|
| Q |
201 |
acaacacctcaaaccttactcnnnnnnncccatcttcttcctctttctatattatctctac----ctagctgcatttattttcactaaccccatgactca |
296 |
Q |
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|||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1503584 |
acaacacctcaaaccttaatctttttttcccaacttcttcctctttctatattatctctacctagctagctgcatttattttcactaaccccatgactca |
1503485 |
T |
|
| Q |
297 |
acacttttctatttaacccaactctcttttctcattcatctctctc |
342 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
1503484 |
acacttttctatttaacccaactcacttttctcattcatttctctc |
1503439 |
T |
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