View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_19 (Length: 320)
Name: NF10225_low_19
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 31444829 - 31445119
Alignment:
| Q |
20 |
gacagccctatggttttggatgaccccacagggaaacaaaccatcaagccatgatgtgattactggaagatggacgccatctgatgctgacaggtcagct |
119 |
Q |
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| T |
31444829 |
gacagccctatggttttggatgaccccacagggaaacaaaccatcaagccatgatgtgattactggaagatggacgccatctgatgctgacaggtcagca |
31444928 |
T |
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| Q |
120 |
gggagggtacccggatatggcgtgatcaccaacataatcaacggcgggcttgaatgtggacgcggtcaggatcctcgggtcgaagaccgaatcgggtttt |
219 |
Q |
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| T |
31444929 |
aggagggtacccggatatggcgtgatcaccaacataatcaacggcgggcttgaatgtggacgcggtcaggatcctcgggtcgaagaccggatcgggtttt |
31445028 |
T |
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| Q |
220 |
ttaaaagatattgtcaattgttgggaacgactaccggtaataacttggattgctacaatcaaagaccatttgcttaagccaattacctatg |
310 |
Q |
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| T |
31445029 |
ataaaagatattgtcaattgttgagaacgactaccggtgataacttggattgctacaatcaaaggccatttgcttaagccaattacctatg |
31445119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 31430507 - 31430798
Alignment:
| Q |
19 |
agacagccctatggttttggatgaccccacagggaaacaaaccatcaagccatgatgtgattactggaagatggacgccatctgatgctgacaggtcagc |
118 |
Q |
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||||||| ||||||||||||||||||| || | |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |
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| T |
31430507 |
agacagctatatggttttggatgacccctcaagcaaacaagccatcaagccatgatgtgattaccggaagatggacgccatctgctgctgacagctcagc |
31430606 |
T |
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| Q |
119 |
tgggagggtacccggatatggcgtgatcaccaacataatcaacggcgggcttgaatgtggacgcggtcaggatcctcgggtcgaagaccgaatcgggttt |
218 |
Q |
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| T |
31430607 |
agggcgggtccccggatacggcgtgatcaccaacataatcaacggcgggctcgaatgcgggcacggtcaggatcctaaagtcgaggatcgggtcggattt |
31430706 |
T |
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| Q |
219 |
tttaaaagatattgtcaattgttgggaacgactaccggtaataacttggattgctacaatcaaagaccatttgcttaagccaattacctatg |
310 |
Q |
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| T |
31430707 |
tatagaaggtattgtcaaatattgggagtgaaccccggcaataacttggattgtaacaaccaaaggccatttgcctaagcgaagtacctatg |
31430798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 31434633 - 31434924
Alignment:
| Q |
19 |
agacagccctatggttttggatgaccccacagggaaacaaaccatcaagccatgatgtgattactggaagatggacgccatctgatgctgacaggtcagc |
118 |
Q |
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|||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||| |
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| T |
31434633 |
agacagccatatggttttggatgacccctcaaggaaacaagccatcaagccatgatgtgattattggaagatggacgccatcgggtgcagacaggtcagc |
31434732 |
T |
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| Q |
119 |
tgggagggtacccggatatggcgtgatcaccaacataatcaacggcgggcttgaatgtggacgcggtcaggatcctcgggtcgaagaccgaatcgggttt |
218 |
Q |
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| T |
31434733 |
cggacgggtccccggatacggcgtgatcaccaacataatcaacggtgggctcgaatgcgggcatggacaggatgctcgagttaatgatcggatcgggttt |
31434832 |
T |
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| Q |
219 |
tttaaaagatattgtcaattgttgggaacgactaccggtaataacttggattgctacaatcaaagaccatttgcttaagccaattacctatg |
310 |
Q |
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| T |
31434833 |
tatagaaggtattgtcaaatattgggagtgagtcctggtgataacttggattgcaacaaccaaagatcatttgcttaagcgagttacctatg |
31434924 |
T |
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