View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10225_low_28 (Length: 254)

Name: NF10225_low_28
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10225_low_28
NF10225_low_28
[»] chr2 (4 HSPs)
chr2 (81-194)||(13066994-13067106)
chr2 (202-254)||(13067156-13067208)
chr2 (205-250)||(40915477-40915522)
chr2 (202-254)||(15930903-15930955)
[»] chr1 (3 HSPs)
chr1 (81-194)||(48538705-48538817)
chr1 (205-254)||(24535404-24535453)
chr1 (202-254)||(48538603-48538655)
[»] chr4 (2 HSPs)
chr4 (202-254)||(42998638-42998690)
chr4 (202-254)||(42999231-42999283)
[»] chr5 (3 HSPs)
chr5 (205-254)||(21012013-21012062)
chr5 (202-251)||(21654597-21654646)
chr5 (202-254)||(29632594-29632646)
[»] chr3 (3 HSPs)
chr3 (205-254)||(32793231-32793280)
chr3 (205-254)||(50833604-50833653)
chr3 (205-254)||(50842200-50842249)
[»] scaffold0421 (1 HSPs)
scaffold0421 (202-254)||(4616-4668)


Alignment Details
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 13066994 - 13067106
Alignment:
Q  81 ttggaaaccgaaaaaggaggctgagtggagagattttctgttttccaaaccgaacagcaattggcgcaaataaatgcaattcattgtatcagcattctat 180  Q
    |||||||| |||||  |||||||||||||||||||| |||||||||| || | | || | | || ||||||||||||||||||||||||||| | | |||    
T  13066994 ttggaaactgaaaagagaggctgagtggagagattt-ctgttttccatacggcatagaattaggtgcaaataaatgcaattcattgtatcagaaatttat 13067092  T
Q  181 aaaaatggcacgtt 194  Q
     |||||||||||||    
T  13067093 caaaatggcacgtt 13067106  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 13067156 - 13067208
Alignment:
Q  202 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    ||||||||||||| ||||||  ||||||||| |||| ||||||||||||||||    
T  13067156 tttttagggttaatactaacggcaattaatgaaccagttttagagggaaattt 13067208  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 40915477 - 40915522
Alignment:
Q  205 ttagggttaacactaacaacaattaatgcaccaattttagagggaa 250  Q
    ||||||||||||||||||||||||||| || || ||| ||||||||    
T  40915477 ttagggttaacactaacaacaattaatacaacattttgagagggaa 40915522  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 15930903 - 15930955
Alignment:
Q  202 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    |||||||||||| |||||| |||||||||||||    ||||||||||||||||    
T  15930903 tttttagggttagcactaagaacaattaatgcattggttttagagggaaattt 15930955  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 48538817 - 48538705
Alignment:
Q  81 ttggaaaccgaaaaaggaggctgagtggagagattttctgttttccaaaccgaacagcaattggcgcaaataaatgcaattcattgtatcagcattctat 180  Q
    |||||||| |||||  |||||||||||||||||||| |||||||||| || | | || | | || ||||||||||||||||||||||||||| | | |||    
T  48538817 ttggaaactgaaaagagaggctgagtggagagattt-ctgttttccatacggcatagaattaggtgcaaataaatgcaattcattgtatcagaaatttat 48538719  T
Q  181 aaaaatggcacgtt 194  Q
     |||||||||||||    
T  48538718 caaaatggcacgtt 48538705  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 24535404 - 24535453
Alignment:
Q  205 ttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    ||||||||||||||||||||||||||| || || ||| ||||||||||||    
T  24535404 ttagggttaacactaacaacaattaatacaacattttgagagggaaattt 24535453  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 48538655 - 48538603
Alignment:
Q  202 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    ||||||||||||||||||||  ||||||||| | || ||||||||||||||||    
T  48538655 tttttagggttaacactaacggcaattaatgaaacagttttagagggaaattt 48538603  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 42998638 - 42998690
Alignment:
Q  202 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    |||||||||||||||||||||||||||||||||  |  |||||||||||||||    
T  42998638 tttttagggttaacactaacaacaattaatgcataagatttagagggaaattt 42998690  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 42999231 - 42999283
Alignment:
Q  202 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    ||||||||||||||||||||| |||||||||||  |  |||||||||||||||    
T  42999231 tttttagggttaacactaacagcaattaatgcataagatttagagggaaattt 42999283  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 21012013 - 21012062
Alignment:
Q  205 ttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    ||||||||||||||||||||||||||| || || ||| ||||||||||||    
T  21012013 ttagggttaacactaacaacaattaatacaacattttgagagggaaattt 21012062  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 21654646 - 21654597
Alignment:
Q  202 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaa 251  Q
    |||||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  21654646 tttttagggttaacactaacaataattaatgcatcagatttagagggaaa 21654597  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 29632594 - 29632646
Alignment:
Q  202 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    |||||||||| ||||||||||||||||||||||  |  |||||||||||||||    
T  29632594 tttttagggtcaacactaacaacaattaatgcattagatttagagggaaattt 29632646  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 32793231 - 32793280
Alignment:
Q  205 ttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    ||||||||||||||||||||||||||| || || ||| ||||||||||||    
T  32793231 ttagggttaacactaacaacaattaatacaacattttgagagggaaattt 32793280  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 50833604 - 50833653
Alignment:
Q  205 ttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    ||||||||||||||||||||||||||| || || ||| |||| |||||||    
T  50833604 ttagggttaacactaacaacaattaatacaacattttgagagagaaattt 50833653  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 50842249 - 50842200
Alignment:
Q  205 ttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    ||||||||||||||||||||||||||| || || ||| |||| |||||||    
T  50842249 ttagggttaacactaacaacaattaatacaacattttgagagagaaattt 50842200  T

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Target: scaffold0421 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 4668 - 4616
Alignment:
Q  202 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaattt 254  Q
    |||||||||||| |||||| |||||||||||||    ||||||||||||||||    
T  4668 tttttagggttagcactaagaacaattaatgcattggttttagagggaaattt 4616  T

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