View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_30 (Length: 250)
Name: NF10225_low_30
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2646977 - 2647217
Alignment:
| Q |
1 |
tactttattatgaaagcaaaaacttttttcatttacatacacttgtaccgccattttcgttacactcaataaaacacacattatgataccaaagttgggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||| |||||||||||||||| |
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| T |
2646977 |
tactttattatgaaagcaaaaacttttttcatttacatacacttgtaccgctatttccgttgcactcaacaaaacacacattctgataccaaagttgggc |
2647076 |
T |
|
| Q |
101 |
cattagagagagtccagagatcatcacattagatctaagagcaatcacaaaagtaagttggacaccatatctaaacccaaagacttacgacattaagtat |
200 |
Q |
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|||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2647077 |
cattagggagagtccggagatcatcacattagacctacgagcaatcacaaaagtgagttggacaccatatctaaacccaaagacttacgacattaaatat |
2647176 |
T |
|
| Q |
201 |
atgagtcacatatatattactcaacattcagtttttcttct |
241 |
Q |
| |
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| || ||||||||||||||||||||||||| |||||||||| |
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| T |
2647177 |
acgaatcacatatatattactcaacattcattttttcttct |
2647217 |
T |
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