View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_36 (Length: 239)
Name: NF10225_low_36
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36669564 - 36669785
Alignment:
| Q |
1 |
attcatacctagtaccaatttccaaccaaggtaggtagaactgaccaagaactattagtttgtctcaagctgcacaatacagcataactttctccacatc |
100 |
Q |
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| T |
36669564 |
attcataccaagtaccaatttccaaccaaggtaggtagaactgaccaagaactattagtttgtctcaagctgcacaatacagcataactttctccacatc |
36669663 |
T |
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| Q |
101 |
aaccccaagcaaaagagagatagagatcaaaaggatctagttataagaacataaataacataagaagtaataaaccaaaaaattccttttaaggagccca |
200 |
Q |
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| T |
36669664 |
aaccccaagcaaaagagagatagagatcaaaaggatctagttataagaacgtaaataacataagaaggaataaaccaaaaaattcc-tttaaggagccca |
36669762 |
T |
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| Q |
201 |
tgatttatagaataataaaatat |
223 |
Q |
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| T |
36669763 |
tgatttatagaataataaaatat |
36669785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 36675246 - 36675440
Alignment:
| Q |
13 |
taccaatttccaaccaaggtaggtagaactgaccaagaactat--tag-tttgtctcaagctgcacaatacagcataactttctccacatcaaccccaag |
109 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
36675246 |
taccaatttccaaccaaggtaggtagaattgactaagaactatattaggtttgtctcaagc---acaatatagcataactttctccacatcaaccccaaa |
36675342 |
T |
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| Q |
110 |
caaaagagagatagagatcaaaaggatctagttataagaacataaataacataagaagtaataaaccaaaaaattccttttaaggagcccatgatttata |
209 |
Q |
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| T |
36675343 |
caaaagagagatagagatcaataggatctagttataag---------aacataagaaggaataaaccaaaaaattcc-ttcaaggagcccataatttata |
36675432 |
T |
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