View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_39 (Length: 225)
Name: NF10225_low_39
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 36672688 - 36672815
Alignment:
| Q |
1 |
actactgtattgggttatacgagtacggttctatacagtttccttgtaggacagtaaaaagaaaatgctggaccaccccctaaacc-ggggtccactctc |
99 |
Q |
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| T |
36672688 |
actactgtattgggttatacgagtacggttctatacagtttccttgtaggacagtaaaaagaaaatgctggaccaccccctaaaccgggggtccactctc |
36672787 |
T |
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| Q |
100 |
ctattcaaatggtgtatcaattatttta |
127 |
Q |
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| T |
36672788 |
ctattcaaatggtgtatcaattatttta |
36672815 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 52198103 - 52198033
Alignment:
| Q |
128 |
gagcagtgataaccagacacaaaaaattagacacaatactgacaccgtatggaaatacagtatttttcctc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
52198103 |
gagcagtgataaccagacacaaaaaattagacacaatactgacaccgtatagaaatacggtatttttcctc |
52198033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 8213407 - 8213340
Alignment:
| Q |
129 |
agcagtgataaccagacacaaaaaattagacacaatactgacaccgtatggaaatacagtatttttcc |
196 |
Q |
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|||| ||||||||| ||||||||| |||||||||||| |||||||||| |||||| |||||||||| |
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| T |
8213407 |
agcaatgataaccaaacacaaaaatatagacacaataccgacaccgtatagaaatatggtatttttcc |
8213340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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