View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_40 (Length: 218)
Name: NF10225_low_40
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2320307 - 2320508
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2320307 |
tgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactca |
2320406 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2320407 |
gccatcttctcggatcgccccgtagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
2320506 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
|
|
| T |
2320507 |
cc |
2320508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2309318 - 2309519
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2309318 |
tgccaaacatggtcctatcatcattgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactca |
2309417 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
||||| |||| |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
2309418 |
gccataatctctgatcgccctacagctcttcctacttccaaaatgttgtccagcaaccaacacaacatcaacaccgctttttatggcccaacatggcgta |
2309517 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
|
|
| T |
2309518 |
cc |
2309519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2292987 - 2293188
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
2292987 |
tgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactca |
2293086 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |
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|
| T |
2293087 |
tccatcttctctgatcgccctacagctcttcctacttccaaaatgttgtccagcaaccaacacaacatcaacaccgcttattatggcccaacatggcgta |
2293186 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
|
|
| T |
2293187 |
cc |
2293188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2302606 - 2302807
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2302606 |
tgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactca |
2302705 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
| ||||| ||| |||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2302706 |
gacatctactctgatcgccctaaagcttttcctacttccaaaatgttgtccagcaaccaacacaacatcagctccggtttttatggcccaacatggcgta |
2302805 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
|
|
| T |
2302806 |
cc |
2302807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 2350178 - 2350374
Alignment:
| Q |
3 |
ccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactcagc |
102 |
Q |
| |
|
||||| ||||||||||||||||| || | ||| ||| |||||||||||||||||| |||||| |||| || ||||| | |||||||||||||||||| |
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|
| T |
2350178 |
ccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagc |
2350277 |
T |
|
| Q |
103 |
catcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgt |
199 |
Q |
| |
|
||||||||| |||||||| ||||||||||| || ||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2350278 |
catcttctctgatcgccctagagctcttcccaccgccaaaatcatctccagcaaccaacacaacatcagctccgctttttatggtgcaacatggcgt |
2350374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 2329876 - 2330076
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||| |||| ||||||||| ||||| | ||||||||||||||| |
|
|
| T |
2329876 |
tgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcc |
2329975 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
|| ||||||| ||||| || | ||| ||||| ||| || | | ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
2329976 |
tccgtcttctctgatcgtcctaaagcacttcccactaacaaactcatgtccagcaaccagcacaatatcagctccgctttttatggaccaacatggcgta |
2330075 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
2330076 |
c |
2330076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2326161 - 2326362
Alignment:
| Q |
1 |
tgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactca |
100 |
Q |
| |
|
||||||||||||||||||||||| | | ||||| | || |||||||||||| |||| |||| ||||||||| ||||| | ||||||||||| ||| |
|
|
| T |
2326161 |
tgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattca |
2326260 |
T |
|
| Q |
101 |
gccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgta |
200 |
Q |
| |
|
| ||||||| ||||| || | ||| ||||| | | || | | | || |||||||| |||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
2326261 |
tctctcttctccgatcgtcctaaagcacttcccagtcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggtgta |
2326360 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
|
|
| T |
2326361 |
cc |
2326362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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