View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_41 (Length: 215)
Name: NF10225_low_41
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 40277497 - 40277696
Alignment:
| Q |
1 |
gaggatgtaggtattccactgaaaagtaatcgatgcaaggtccttttgatcacattttaccaacaagactgtgacttgatgtaccgtcaaaggaagattc |
100 |
Q |
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| T |
40277497 |
gaggatgtaggcattccactgaaaagtaatcgatgcaaggtccttttgatcacatttttccaacaagactgtgacttgatgtactgtcaaaggaagattc |
40277596 |
T |
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| Q |
101 |
aacttgatcccttatctacagaggaaacttggactttgttcnnnnnnnnntcaggtagtattcatgatgagtacttatgctcgtttgacttattgaatct |
200 |
Q |
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| T |
40277597 |
aacttaatcccttatctacagaggaaacttggactttgttcaaaaaaaaatcaggtagtattcatgatgagtacttatgctcgattgacttattgaatct |
40277696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 40326080 - 40326196
Alignment:
| Q |
25 |
agtaatcgatgcaaggtccttttgatcacattttaccaacaagactgtgacttgatgtaccgtcaaaggaagattcaacttgatcccttatctacagagg |
124 |
Q |
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| T |
40326080 |
agtaatcgatgcaaggtccttttgaccacatgtcgccaacaagattgtgagtttatacattgtcaaagggagattcaacttagtcctttatccacagagg |
40326179 |
T |
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| Q |
125 |
aaacttggactttgttc |
141 |
Q |
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| T |
40326180 |
aagcttggactttgttc |
40326196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 40598058 - 40597942
Alignment:
| Q |
25 |
agtaatcgatgcaaggtccttttgatcacattttaccaacaagactgtgacttgatgtaccgtcaaaggaagattcaacttgatcccttatctacagagg |
124 |
Q |
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| T |
40598058 |
agtaatcgatgcaagatccttttgaccgcacttgcccaacaagattgtgaattgatgcactccaaaaggaatattcaacttggtcccttatctatagagg |
40597959 |
T |
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| Q |
125 |
aaacttggactttgttc |
141 |
Q |
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| T |
40597958 |
aatcttggactttgttc |
40597942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 40386920 - 40387035
Alignment:
| Q |
25 |
agtaatcgatgcaaggtccttttgatcacattttaccaacaagactgtgacttgatgtaccgtcaaaggaagattcaacttgatcccttatctacagagg |
124 |
Q |
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| T |
40386920 |
agtaatcgatgcaaggtacttttgaccgcacgtcgccaaaaatattgtgacttagtttactgtcaaaggaagattctacttgatcccttatctacagagg |
40387019 |
T |
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| Q |
125 |
aaacttggactttgtt |
140 |
Q |
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| T |
40387020 |
aagcttcgacgttgtt |
40387035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 40333690 - 40333757
Alignment:
| Q |
73 |
gacttgatgtaccgtcaaaggaagattcaacttgatcccttatctacagaggaaacttggactttgtt |
140 |
Q |
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| T |
40333690 |
gacttaatgcactgtcaaagggagattctacttgatccattatctacagaggaagcttcgactttgtt |
40333757 |
T |
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