View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10225_low_42 (Length: 215)

Name: NF10225_low_42
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10225_low_42
NF10225_low_42
[»] chr2 (7 HSPs)
chr2 (20-205)||(2326082-2326267)
chr2 (31-194)||(2329808-2329971)
chr2 (21-194)||(2320229-2320402)
chr2 (21-200)||(2292909-2293088)
chr2 (20-194)||(2302527-2302701)
chr2 (21-194)||(2309240-2309413)
chr2 (25-194)||(2350102-2350271)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 2326082 - 2326267
Alignment:
Q  20 cacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcat 119  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326082 cacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcat 2326181  T
Q  120 caatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2326182 caatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctctct 2326267  T

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Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 2329808 - 2329971
Alignment:
Q  31 atcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaata 130  Q
    ||||||| |||||| |||||||| |||||||||||  |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  2329808 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 2329907  T
Q  131 tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 194  Q
    |||| ||  |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  2329908 tcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaa 2329971  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 2320229 - 2320402
Alignment:
Q  21 acacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatc 120  Q
    ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320229 acacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatc 2320328  T
Q  121 aatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 194  Q
    | | |  ||||||| ||  |||||||||||| ||||  ||||| ||||||||| ||||| | ||||||||||||    
T  2320329 actgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa 2320402  T

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Target: chr2; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 2292909 - 2293088
Alignment:
Q  21 acacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatc 120  Q
    ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2292909 acacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatc 2293008  T
Q  121 aatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatc 200  Q
    | | |  ||||||| ||  |||||||||||| |||   ||||| | ||||||||||||| | |||||||||||| |||||    
T  2293009 actgtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatc 2293088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 2302527 - 2302701
Alignment:
Q  20 cacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcat 119  Q
    |||||||||||||| ||| || ||| || | |||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2302527 cacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcat 2302626  T
Q  120 caatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 194  Q
    || |||  | ||||| ||  |||||||||||| ||||   |||| ||||||||||||||| | ||||||||||||    
T  2302627 cactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaa 2302701  T

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Target: chr2; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 2309240 - 2309413
Alignment:
Q  21 acacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatc 120  Q
    ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2309240 acacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatc 2309339  T
Q  121 aatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 194  Q
    | | |  ||||||| ||   ||||||||||| ||||  ||||| ||||||||| ||||| | ||||||||||||    
T  2309340 attgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa 2309413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 2350102 - 2350271
Alignment:
Q  25 atccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatc 124  Q
    |||||||| |||| ||| || | |||||||||||||||||  |||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||| ||    
T  2350102 atccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 2350201  T
Q  125 ttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 194  Q
    | || ||| | | | |||||||||||| ||||||||||| | |||| |||||||||||||||||||||||    
T  2350202 tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaa 2350271  T

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