View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_5 (Length: 446)
Name: NF10225_low_5
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 1459606 - 1460033
Alignment:
| Q |
19 |
accccgcaatcacattgaataatatctgctctattcaactttgttaaggttttgcggcatgcgttggaaaagacaagagagacataggatatatcatata |
118 |
Q |
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| T |
1459606 |
accccgcaatcacattgaataatatctgctctattcaactttgttaaggttttgcggcatgcgttggaaaagagaagagagacataggatatatcatata |
1459705 |
T |
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| Q |
119 |
gttgaagatcttcaagaactggacatccctctagaagacaatcaagatctccatattgatgaaactcaatgactttcagatgtagggttttgagtgaggg |
218 |
Q |
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| T |
1459706 |
gttgaagatcttcaagaactggacatccctctagaagacaatcaagatctccatattgttgaaactcaatgtctttcagatgtagggttttgagtgaggg |
1459805 |
T |
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| Q |
219 |
taatcttatgagataattacaaaatccagaacccataaaaagttcactgagcttaagaataacaaggggttcactagtaaagatagtattaggaacttca |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |
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| T |
1459806 |
taatcttatgagataattacaaaacccagaacccataaaaagttcactgagcttaagaataacaagggtttctctagtaaagatagtattaggaaattca |
1459905 |
T |
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| Q |
319 |
gggtatattctttcccaataatgcatgtaatgattatcagcagcttgtcgcgaaacaacgtatttggttaccgtcaccgttttggttccgacgaattcga |
418 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
1459906 |
gggtatattctttcccaattatgcatgtaatgattaccagcagcttgtcgcgaaacaacgtatttggataccgtcaccgttttggttccgacaaattcga |
1460005 |
T |
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| Q |
419 |
gagctggaacgagacaccatagattctt |
446 |
Q |
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| T |
1460006 |
gagctggaacgagacaccatagattctt |
1460033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 23 - 286
Target Start/End: Original strand, 1446207 - 1446470
Alignment:
| Q |
23 |
cgcaatcacattgaataatatctgctctattcaactttgttaaggttttgcggcatgcgttggaaaagacaagagagacataggatatatcatatagttg |
122 |
Q |
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|||||| ||||| |||||||||||||||| |||||||||||||||||| | ||| ||||| | | || || || ||||||||||| ||||||||| |
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| T |
1446207 |
cgcaattacattcaataatatctgctctaatcaactttgttaaggtttcacaacatctgttgggatcaagaaaagtgagataggatatatgatatagttg |
1446306 |
T |
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| Q |
123 |
aagatcttcaagaactggacatccctctagaagacaatcaagatctccatattgatgaaactcaatgactttcagatgtagggttttgagtgagggtaat |
222 |
Q |
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| T |
1446307 |
aagatcttcaataactggacaataccctagaagacacttaagatctccatatcgatcaaacttaatgtctttcaaatgtagggttttgagtgaaggtaat |
1446406 |
T |
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| Q |
223 |
cttatgagataattacaaaatccagaacccataaaaagttcactgagcttaagaataacaaggg |
286 |
Q |
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| T |
1446407 |
attatgggataataacaaaatgccggacccatataaagataactgagcttaagaacaacaaggg |
1446470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 12105028 - 12104995
Alignment:
| Q |
37 |
ataatatctgctctattcaactttgttaaggttt |
70 |
Q |
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| T |
12105028 |
ataatatctgctcttttcaactttgttaaggttt |
12104995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 975118 - 975166
Alignment:
| Q |
107 |
atatatcatatagttgaagatcttcaagaactggacatccctctagaag |
155 |
Q |
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| T |
975118 |
atatataacatagttgaagatcttcaagaactggacatccatctagaag |
975166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 409710 - 409673
Alignment:
| Q |
118 |
agttgaagatcttcaagaactggacatccctctagaag |
155 |
Q |
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| T |
409710 |
agttgaagatcttgaagaactggacatccatctagaag |
409673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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