View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10225_low_9 (Length: 432)
Name: NF10225_low_9
Description: NF10225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10225_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 46251132 - 46250759
Alignment:
| Q |
1 |
tgttgaaaaccgatggtcatgttggttaattacttattatgtggctttccagttccttttcaaattctttgttttatgataaaactttgataaattatgg |
100 |
Q |
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| T |
46251132 |
tgttgaaaaccgatggtcatgttggttaattacttattatgtggctttccagttccttttcaaattctttgttttatgataaaactttgataaattatgg |
46251033 |
T |
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| Q |
101 |
cacagaaaaatgcaatttatgtttcataggatatgaagatgagttagacaaaggttaatttggtgtaacacaaaagtagagtttgatattttcatatata |
200 |
Q |
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| T |
46251032 |
cacagaaaaatgcaatttatgtttcataggatatgaagatgagttagacaaaggttaatttggtgtaacacaaaagtagagtttgatattttcatat--a |
46250935 |
T |
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| Q |
201 |
tattaatggacaatggtttgccgattatcatagagatagacatgaattactgatatgcttctgcacgggttggagacttggagttaatcaaaatcgttac |
300 |
Q |
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| T |
46250934 |
tattaatggacaatggtttgccgattatcatagagatagacatggattactgatatgcttctgcacgggttggagacttggagttaatcaaaattgttac |
46250835 |
T |
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| Q |
301 |
taagttgagtagatatgttttatttgagtttttctcattacaaattgttaatcaaatttgttcttccttttcggaa |
376 |
Q |
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| T |
46250834 |
taagttgagtagatatgttttatttgagtttttctcattacaatttgttaatcaaatttgttcttccttttcggaa |
46250759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 46250751 - 46250706
Alignment:
| Q |
367 |
cttttcggaaatcaaaacgattttaataacatcttttaggcacata |
412 |
Q |
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| T |
46250751 |
cttttcggaaatcaaaacgattttaataacatcttttaggcacata |
46250706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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