View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_high_1 (Length: 546)
Name: NF10226_high_1
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 78 - 532
Target Start/End: Original strand, 35125728 - 35126182
Alignment:
| Q |
78 |
aggacacatgtatgacatcaagacacacctaatccaaggaatccaaggaatgtccgtgcttcatagcagctagcacataataatgatatataattaacca |
177 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35125728 |
aggacacatgtatgacatcaagacacacctaatctaagaaattcaaagaatgtccgtgcttgatagcagctagcacataataatgatatataattaacca |
35125827 |
T |
|
| Q |
178 |
ccttattaactggaccaaggcagatatagttagtgttttcatcctcatagtgtatatgcttcataacatgattgagtgctttattccttagtttagagta |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35125828 |
ccttattaactggaccaaggcagatatagttagtgttttcatcctcatagtgtatatgcttcataacatgattgagtgctttattccttagtttagagta |
35125927 |
T |
|
| Q |
278 |
aggccaatgcatgagaagaggttccccaacattatcaagaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaattat |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35125928 |
aggccaatgcatgagaagaggttccccaacattatcaagaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaattat |
35126027 |
T |
|
| Q |
378 |
tactcattattaattggaaatattataggtatatgtgacacaattaattaagacaagaaccttagcacaatgatatttagcgtggtcccaatttagtata |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35126028 |
tactcattattaattggaaatattataggtatatgtgacacaattaattaagacaagaaccttagcacaatgatatttagcgtggtcccaatttagtata |
35126127 |
T |
|
| Q |
478 |
tgataaggtaaggtatagatctctcttctgatagataaaacaatagcactgaatg |
532 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35126128 |
tgataaggtaaggtatagatctctcttctgatagataaaacaatagcactgaatg |
35126182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 78 - 532
Target Start/End: Complemental strand, 33340370 - 33339925
Alignment:
| Q |
78 |
aggacacatgtatgacatcaagacacacctaatccaaggaatccaaggaatgtccgtgcttcatagcagctagcacataataatgatatataattaacca |
177 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
33340370 |
aggacacatgtatgacatcaagacagacctaatccaaggaatccaaggaatgtccgtgcttcatagca---------taataatgatatataattaacca |
33340280 |
T |
|
| Q |
178 |
ccttattaactggaccaaggcagatatagttagtgttttcatcctcatagtgtatatgcttcataacatgattgagtgctttattccttagtttagagta |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33340279 |
ccttattaactggaccaaggcagatatagttagtgttttcatcctcatagtgtatatgcttcataacatgattgagtgctttattccttagtttagagta |
33340180 |
T |
|
| Q |
278 |
aggccaatgcatgagaagaggttccccaacattatcaagaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaattat |
377 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33340179 |
aggccaatgcatgagaagaggttccccaacattatcaagaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaattat |
33340080 |
T |
|
| Q |
378 |
tactcattattaattggaaatattataggtatatgtgacacaattaattaagacaagaaccttagcacaatgatatttagcgtggtcccaatttagtata |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33340079 |
tactcattattaattggaaatattataggtatatgtgacacaattaattaagacaagaaccttagcacaatgatatttagcgtggtcccaatttagtata |
33339980 |
T |
|
| Q |
478 |
tgataaggtaaggtatagatctctcttctgatagataaaacaatagcactgaatg |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33339979 |
tgataaggtaaggtatagatctctcttctgatagataaaacaatagcactgaatg |
33339925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 33340456 - 33340391
Alignment:
| Q |
3 |
cacagacacgccgacaccgttgataatttnnnnnnntcacatatgttactgtaattataagtgtca |
68 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
33340456 |
cacagacacgccgacaccgttgataatttaaaaaaatcacatattttactgtaattataagtgtca |
33340391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35125642 - 35125707
Alignment:
| Q |
3 |
cacagacacgccgacaccgttgataatttnnnnnnntcacatatgttactgtaattataagtgtca |
68 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
35125642 |
cacagacacgccgacaccgttgataatttaaaaaaatcacatattttactgtaattataagtgtca |
35125707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 177 - 393
Target Start/End: Complemental strand, 22506099 - 22505882
Alignment:
| Q |
177 |
accttattaactggaccaaggcagatatagttagtgttttcatcctcatagtgtatatgcttcataacatgattgagtgctttattccttagtttagagt |
276 |
Q |
| |
|
|||||||| || ||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||| |
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|
| T |
22506099 |
accttattcacgggaccaaggcaaatgtagttagtgttttgatcctcatagtgtatatgcttcataacgtgatcaagtgctttattccttaatttggagt |
22506000 |
T |
|
| Q |
277 |
aaggccaatgcatgagaagaggttccccaacattatcaagaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaat-t |
375 |
Q |
| |
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| ||||||||||| ||||||||||| |||||||| || |||||| ||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |
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| T |
22505999 |
atggccaatgcataagaagaggttcaccaacattgtccagaaaagcccataaaatattttgtattgttgggcatggatggtacaaatcttcctgcaataa |
22505900 |
T |
|
| Q |
376 |
attactcattattaattg |
393 |
Q |
| |
|
|||| ||||||||||||| |
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|
| T |
22505899 |
attattcattattaattg |
22505882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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