View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_high_10 (Length: 333)
Name: NF10226_high_10
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 25 - 333
Target Start/End: Complemental strand, 28667967 - 28667652
Alignment:
| Q |
25 |
cctttgccctgcacctttttaatgttattattatctctgtccgtattcaaattttcttccggatgtaaccaacggcactttgcaactgagtgtccaagaa |
124 |
Q |
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| T |
28667967 |
cctttgccctgcacctttttaatgttattattatctctgtccgtattcaaattttcttccggatgtaactaacgacactttgcaactgagtgtccaagaa |
28667868 |
T |
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| Q |
125 |
tctgatagtgggagtaaaagtctgggagccattcgtactccaccgcaacgggaaagcgaaaccttccctttcaacatcggtctcataaaaaatacgacga |
224 |
Q |
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| T |
28667867 |
tctgatagtgggagaaaaagtctgggtgccattcgtactccacaacaacgggaaagcgaaaccttccctttcaacattggtctcataaaaaatacaacga |
28667768 |
T |
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| Q |
225 |
gaaaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga-------catcgataatgagaggtgcgcctaatgctccagcatcttc |
317 |
Q |
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| T |
28667767 |
gaaaatctatgtccactagcacccgcgtgtaatggccgaaggtgcgtttctgagttgcggcatcgataatgagaggtgcgcctaatgctccagcatcttc |
28667668 |
T |
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| Q |
318 |
catgagtgttccgttt |
333 |
Q |
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| T |
28667667 |
catgagtgctccgttt |
28667652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 17705285 - 17705212
Alignment:
| Q |
205 |
tctcataaaaaatacgacgagaaaa-tctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
277 |
Q |
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| T |
17705285 |
tctcataaaaaaaccgacgagagaagtttatgtccaccagcacccgcgcataatggccaaaggtgcgtttctga |
17705212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 23869334 - 23869381
Alignment:
| Q |
230 |
tctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
277 |
Q |
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| T |
23869334 |
tctatatccaccagcacccgcacataatggccaaaggtgcgtttctga |
23869381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 25276207 - 25276248
Alignment:
| Q |
236 |
tccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
277 |
Q |
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| T |
25276207 |
tccaccagcacctgcgtgtaatggccaaatgtgcgtttctga |
25276248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 14782999 - 14782943
Alignment:
| Q |
112 |
gagtgtccaagaatctgatagtgggagtaaaagtctgggagccattcgtactccacc |
168 |
Q |
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| T |
14782999 |
gagtgtccaagaatctgacaatgtgagtagaattcagggagccattcgtactccacc |
14782943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 277
Target Start/End: Complemental strand, 23646201 - 23646030
Alignment:
| Q |
109 |
actgagtgtccaagaatctgatagtgggagtaaaagtctgggagccattcgtactccaccgcaacgggaaagcgaaaccttccctttcaacatcggtctc |
208 |
Q |
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| T |
23646201 |
actgagtgtccaagaatttgacaatatgagcagaattcagggagccactcgtactccacctcaataggaaagcgaacccttccctctccaccatgatctc |
23646102 |
T |
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| Q |
209 |
ataaaaaata--cgacgaga-aaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
277 |
Q |
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| T |
23646101 |
ttaaaaaaaaaccgacgagagaagtctatatccactagcacccacgcataattgccaaaggtgcgtatctga |
23646030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 26798038 - 26798082
Alignment:
| Q |
226 |
aaaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcg |
270 |
Q |
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| T |
26798038 |
aaaatctacgtccaccagcacccgcgcataatggccaaatgtgcg |
26798082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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