View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_high_13 (Length: 275)
Name: NF10226_high_13
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_high_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 38486544 - 38486286
Alignment:
| Q |
17 |
aaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaaga |
116 |
Q |
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| T |
38486544 |
aaccaagcaagagaagaaacgaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaaga |
38486445 |
T |
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| Q |
117 |
gatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgatt |
216 |
Q |
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| T |
38486444 |
gatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgatt |
38486345 |
T |
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| Q |
217 |
ttccggctttccttctccaagtttcaagggacctggcaattttacacggtatatttcca |
275 |
Q |
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| T |
38486344 |
ttccggctttccttctccaagtttcaagggacctggcaattttacacggtatatttcca |
38486286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 3685655 - 3685536
Alignment:
| Q |
137 |
tcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaa |
236 |
Q |
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| T |
3685655 |
tcctcaaaataattgtcttgattcatatctatggtctgaattgcatcaccccgcgtaaagatcattgcatgattctgattttccggtttcccttctccaa |
3685556 |
T |
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| Q |
237 |
gtttcaagggacctggcaat |
256 |
Q |
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| T |
3685555 |
gttttaaaggaccaggcaat |
3685536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 30295459 - 30295375
Alignment:
| Q |
153 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
237 |
Q |
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| T |
30295459 |
cctggttcatatcaattgtttggagggcttcgccacgagtgtatattattgcattgttttgattttcaggcttcccttctccaag |
30295375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 30120946 - 30120706
Alignment:
| Q |
14 |
atgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttcca |
113 |
Q |
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|||||||| ||||||||||| ||| | || || || || |||||||| || || ||||| |||||||| || | ||| |||||| | | | ||||| | |
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| T |
30120946 |
atgaaccaggcaagagaggacacggagccagtgaaaatgtgttccctgacacctaaaattgttggtttccggacaccgtagtaacgtctatactcttcaa |
30120847 |
T |
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| Q |
114 |
agagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttg |
213 |
Q |
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| T |
30120846 |
ggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcatgtctatagtctgcaaagcgtccccgcgagtgaagatgatggcgtgattttg |
30120747 |
T |
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| Q |
214 |
attttccggctttccttctccaagtttcaagggacctggca |
254 |
Q |
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| T |
30120746 |
attctcgggctttccctccccgagcttcaatggacccggca |
30120706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 34191701 - 34191617
Alignment:
| Q |
153 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
237 |
Q |
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|||| ||||||||||||||||||| |||||| || || |||||||| || || || ||||| || || ||||||||||| ||||| |
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| T |
34191701 |
cctgattcatatcaatagtttgaagtgcatcaccacgggtgaatattatcgcatgattttggttctcaggctttccttcaccaag |
34191617 |
T |
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