View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10226_high_16 (Length: 250)

Name: NF10226_high_16
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10226_high_16
NF10226_high_16
[»] chr8 (9 HSPs)
chr8 (89-202)||(8227249-8227362)
chr8 (89-202)||(9762932-9763045)
chr8 (89-202)||(7968436-7968549)
chr8 (97-202)||(36582901-36583006)
chr8 (89-202)||(11481429-11481542)
chr8 (94-202)||(13355815-13355923)
chr8 (89-197)||(6870634-6870742)
chr8 (94-164)||(7987213-7987282)
chr8 (94-153)||(7987283-7987342)
[»] chr7 (18 HSPs)
chr7 (89-202)||(28636379-28636492)
chr7 (89-202)||(5972973-5973086)
chr7 (89-191)||(23809680-23809782)
chr7 (89-202)||(38440446-38440559)
chr7 (89-202)||(2944080-2944193)
chr7 (94-194)||(7767084-7767184)
chr7 (94-202)||(11039196-11039304)
chr7 (127-202)||(25502153-25502228)
chr7 (94-202)||(30541496-30541604)
chr7 (95-190)||(33189415-33189508)
chr7 (94-197)||(36298792-36298895)
chr7 (94-202)||(1053128-1053236)
chr7 (94-173)||(31457303-31457384)
chr7 (89-202)||(22519204-22519316)
chr7 (136-179)||(15954686-15954729)
chr7 (94-202)||(27336938-27337046)
chr7 (137-179)||(47925012-47925054)
chr7 (159-196)||(40910567-40910604)
[»] chr5 (11 HSPs)
chr5 (89-202)||(39207122-39207235)
chr5 (94-202)||(3926206-3926314)
chr5 (89-202)||(35188598-35188711)
chr5 (92-202)||(23429246-23429356)
chr5 (107-202)||(42878917-42879012)
chr5 (129-197)||(26621391-26621459)
chr5 (94-202)||(39800427-39800535)
chr5 (103-202)||(2209546-2209644)
chr5 (136-202)||(33742765-33742833)
chr5 (136-188)||(40056987-40057039)
chr5 (89-117)||(42837606-42837634)
[»] chr4 (14 HSPs)
chr4 (89-190)||(41039359-41039460)
chr4 (89-202)||(23626855-23626965)
chr4 (89-202)||(38951634-38951747)
chr4 (89-177)||(22278351-22278439)
chr4 (90-202)||(40714857-40714969)
chr4 (89-197)||(42555330-42555438)
chr4 (94-202)||(8819321-8819429)
chr4 (94-202)||(29117034-29117142)
chr4 (89-202)||(43624426-43624541)
chr4 (94-202)||(51357182-51357289)
chr4 (136-202)||(17120334-17120400)
chr4 (148-203)||(19841753-19841808)
chr4 (94-175)||(36464840-36464920)
chr4 (136-202)||(40571958-40572025)
[»] chr2 (9 HSPs)
chr2 (89-202)||(13807557-13807670)
chr2 (89-202)||(5704615-5704728)
chr2 (89-202)||(31575946-31576059)
chr2 (93-202)||(5110220-5110329)
chr2 (93-202)||(5938740-5938849)
chr2 (93-202)||(45151247-45151356)
chr2 (93-184)||(13626323-13626414)
chr2 (136-197)||(45458442-45458503)
chr2 (94-202)||(42625039-42625147)
[»] chr1 (14 HSPs)
chr1 (89-190)||(48379090-48379191)
chr1 (91-202)||(11894302-11894413)
chr1 (85-202)||(31292756-31292870)
chr1 (91-202)||(36728755-36728866)
chr1 (89-202)||(47140798-47140911)
chr1 (94-202)||(29678324-29678432)
chr1 (89-202)||(17562786-17562899)
chr1 (89-202)||(31585233-31585346)
chr1 (136-202)||(38264380-38264446)
chr1 (119-202)||(25987400-25987482)
chr1 (138-202)||(19884459-19884523)
chr1 (136-184)||(2191843-2191891)
chr1 (136-179)||(52252714-52252757)
chr1 (140-202)||(25294014-25294076)
[»] chr6 (9 HSPs)
chr6 (89-202)||(8576762-8576875)
chr6 (89-195)||(10788495-10788601)
chr6 (94-202)||(35167296-35167404)
chr6 (89-170)||(7622403-7622484)
chr6 (89-202)||(28582153-28582265)
chr6 (136-202)||(7245534-7245600)
chr6 (93-202)||(34433207-34433316)
chr6 (127-195)||(642103-642171)
chr6 (98-202)||(10408977-10409081)
[»] chr3 (13 HSPs)
chr3 (89-202)||(5295220-5295333)
chr3 (89-202)||(25874708-25874821)
chr3 (89-197)||(21288114-21288222)
chr3 (89-202)||(3778912-3779025)
chr3 (89-202)||(27926637-27926739)
chr3 (89-202)||(13825920-13826033)
chr3 (136-202)||(36584410-36584476)
chr3 (136-202)||(48251717-48251783)
chr3 (94-202)||(12149030-12149138)
chr3 (131-202)||(26187934-26188005)
chr3 (138-179)||(13084754-13084795)
chr3 (89-157)||(32847582-32847650)
chr3 (93-173)||(37341418-37341498)
[»] scaffold0155 (1 HSPs)
scaffold0155 (89-202)||(6893-7006)
[»] scaffold0115 (1 HSPs)
scaffold0115 (94-202)||(22060-22168)
[»] scaffold0057 (1 HSPs)
scaffold0057 (136-175)||(66580-66619)
[»] scaffold0041 (1 HSPs)
scaffold0041 (159-196)||(62490-62527)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 8227249 - 8227362
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||    
T  8227249 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgtttagtcaatgatctttgttgttattgtaatgtat 8227348  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  8227349 gaatattatgtttt 8227362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 9762932 - 9763045
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||| |||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||    
T  9762932 tatgtttttgttaaattaaagaactttatttttattaaatgtaagggactttatttatgtttttgttgagtcaatgatttttgttgttattgtaatgtat 9763031  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  9763032 gaatattatgtttt 9763045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 7968436 - 7968549
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| |||    
T  7968436 tatgcttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttgtttagccaatgatctttgttgttattgtaatgtat 7968535  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  7968536 ggatattatgtttt 7968549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 36582901 - 36583006
Alignment:
Q  97 tgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatatta 196  Q
    ||||||||||||||||||||| |||  || |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  36582901 tgttaaatcaaagaactttatttttaataaatgtaagacactttatttatgtttttgtggagtcaatgatctttgttgttattgtaatgtatgaatatta 36583000  T
Q  197 tatttt 202  Q
    | ||||    
T  36583001 tgtttt 36583006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 11481542 - 11481429
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||| || ||||||||||||||||||||||||||||| |||| | ||||| |||| | |    
T  11481542 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagggagtttatttatgtttttgttgagtcaatgatttttgctattattgtaatgtgt 11481443  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  11481442 gaatattatgtttt 11481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 13355923 - 13355815
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||||||||||| |||||||| ||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||| |||| |||    
T  13355923 ttttgttaaatcaaataactttatttttattaaatgtatgagactttatttatgtttttgttaagtcaatgatctttgttgttgttctaatgtatggata 13355824  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  13355823 ttatgtttt 13355815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 6870634 - 6870742
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||||||| ||| |||| ||| ||| |||||||  ||||||||||| ||||||||  |||||||||||||||||| ||| |||| |||    
T  6870634 tatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatatttttgtttggtcaatgatctttgttgtaattgtaatgtat 6870733  T
Q  189 gaatattat 197  Q
    |||||||||    
T  6870734 gaatattat 6870742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 7987213 - 7987282
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatg 164  Q
    ||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||    
T  7987213 ttttgttaaatgaaagaactttatttttatta-atgtaagagactttatttatgtttttgttgagccaatg 7987282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 7987283 - 7987342
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttg 153  Q
    ||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  7987283 ttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttg 7987342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 28636492 - 28636379
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||    
T  28636492 tatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatctttgtttttattgtaatgtat 28636393  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  28636392 gaatattatgtttt 28636379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 5973086 - 5972973
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |||    
T  5973086 tatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtattttttgagtcaatgatcttttttgttattgtaatgtat 5972987  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  5972986 gaatattatgtttt 5972973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 23809680 - 23809782
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||| ||||| ||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| |||    
T  23809680 tatgtttttgttaaatcaaagaattttatttttattaaatgtaagggactttttttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 23809779  T
Q  189 gaa 191  Q
    |||    
T  23809780 gaa 23809782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 38440446 - 38440559
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||| |||||||||||||| |||| ||| ||| ||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  38440446 tatgttttttttaaatcaaagaacattatttttattaaatgcaaggaactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 38440545  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  38440546 gaatattatgtttt 38440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 2944080 - 2944193
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||| || |||||| ||||||||| |||||||||||||||||||||||| ||||  ||    
T  2944080 tatgcttttgttaaatcaaagaactttatatttattaaatgtaagaaacattatttttgtttttgtcgagtcaatgatctttgttgttattgtaatgcat 2944179  T
Q  189 gaatattatatttt 202  Q
    | ||| ||||||||    
T  2944180 ggatactatatttt 2944193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 7767184 - 7767084
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||||||||||||||||||||| ||| ||| |||||| ||| ||||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  7767184 ttttgttaaatcaaagaactttatgtttattaaatgtaaaagattttatgtatgtttttgttgagtcaatgatttttgttgttattgtaatctatgaata 7767085  T
Q  194 t 194  Q
    |    
T  7767084 t 7767084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 11039196 - 11039304
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||  || |||||||||| |||||||| |||| ||||||||    
T  11039196 ttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttgtgtttttgtttcgttaatgatctttattgttattgtaatctatgaata 11039295  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  11039296 ttatgtttt 11039304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 25502228 - 25502153
Alignment:
Q  127 atgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||    
T  25502228 atgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttaatgtaatgtatgaatattatatttt 25502153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 30541496 - 30541604
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||| || ||||||||||||||| ||| ||| |||||| |||||| |||||||||||| || ||||||||||||||||||||||| |||| ||||||||    
T  30541496 ttttgatatatcaaagaactttatttttattaaatgtaatagacttgatttatgtttttcttaagtcaatgatctttgttgttattgtaatgtatgaata 30541595  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  30541596 ttatgtttt 30541604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 33189508 - 33189415
Alignment:
Q  95 tttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatga 190  Q
    ||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |||||    
T  33189508 tttgttaaatcaaagaactttatttttattaaatgtaag-gactttatttatgtttttgttgagtcaatgatcttt-ttgttattgtaatgtatga 33189415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 36298895 - 36298792
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||| ||||||||||||||||| | | ||| || |||   |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  36298895 ttttgtcaaatcaaagaactttatttgtattaaatataaagtactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatatatggata 36298796  T
Q  194 ttat 197  Q
    ||||    
T  36298795 ttat 36298792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 1053128 - 1053236
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||| |||| |||||||||||| ||| ||| ||| |||  | |||||||||||||||||||||| ||||||||||||||||||  |||| ||||||||    
T  1053128 ttttgtcaaatgaaagaactttatttttattaaatgcaaggaattttatttatgtttttgttgagttaatgatctttgttgttatcgtaatgtatgaata 1053227  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  1053228 ttatgtttt 1053236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 31457384 - 31457303
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgt--tacatgtaagagactttatttatgtttttgttgagtcaatgatctttgtt 173  Q
    |||||||||||||||||||||| ||||| |  || || ||||  ||||||||||||||||||||||||||||||||||||||    
T  31457384 ttttgttaaatcaaagaactttttatttttattaaatataaggaactttatttatgtttttgttgagtcaatgatctttgtt 31457303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 22519204 - 22519316
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||  ||| ||| ||||||   |||||||||||| ||| ||||||||||||| |||||||||| || |||| |||    
T  22519204 tatgcttttgttaaatcaaagaactttacttttattaaatgtaatgaactttatttatg-tttcgttgagtcaatgaactttgttgtttttgtaatgtat 22519302  T
Q  189 gaatattatatttt 202  Q
      ||||||| ||||    
T  22519303 agatattatgtttt 22519316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 15954686 - 15954729
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttatt 179  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  15954686 actttatttatgtttttggtgagtcaatgatctttgttgttatt 15954729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 27337046 - 27336938
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||||||| ||||| | | ||| |||||    ||||||| ||||||||| ||||||||| ||||||||||||| ||||||| |||  |||    
T  27337046 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatctatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 27336947  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  27336946 ttatgtttt 27336938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 47925054 - 47925012
Alignment:
Q  137 ctttatttatgtttttgttgagtcaatgatctttgttgttatt 179  Q
    |||||||||||||||||||||||||| ||||||| ||||||||    
T  47925054 ctttatttatgtttttgttgagtcaaggatctttattgttatt 47925012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 40910567 - 40910604
Alignment:
Q  159 tcaatgatctttgttgttattataatatatgaatatta 196  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  40910567 tcaatgatctttgttgttattgtaatgtatgaatatta 40910604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 39207122 - 39207235
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  39207122 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgttgtgtcaatgatctttgttgttattgtaatgtat 39207221  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  39207222 gaatattatgtttt 39207235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 3926314 - 3926206
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  3926314 ttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatttttgttgttattgtaatgtatgaata 3926215  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  3926214 ttatgtttt 3926206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 35188598 - 35188711
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  35188598 tatgattttgttaaatcaaataactttatttttattaaatgtaagggactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatttat 35188697  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  35188698 gaatattatgtttt 35188711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 23429356 - 23429246
Alignment:
Q  92 gtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaa 191  Q
    ||||||||||||||||| |||||||| ||| ||| ||||||  ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||    
T  23429356 gtttttgttaaatcaaataactttatttttattaaatgtaacggactttatttatgtttttgttgagtaaatgatctttgttgttattgtgatatatgaa 23429257  T
Q  192 tattatatttt 202  Q
    |||||| ||||    
T  23429256 tattatgtttt 23429246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 42878917 - 42879012
Alignment:
Q  107 aagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||| ||| |||  |||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| |||||    
T  42878917 aagaactttatttttattaagtgtaagggactttatttatgtttttgttgagttaatgatctttgttgttattgtaatgtatgaatattacatttt 42879012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 26621459 - 26621391
Alignment:
Q  129 gtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattat 197  Q
    |||||| |||||||||||||||||||||||||||| || ||| |||||||| |||| ||||||||||||    
T  26621459 gtaagaaactttatttatgtttttgttgagtcaataattttttttgttattgtaatgtatgaatattat 26621391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 39800427 - 39800535
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||||||| ||||| | | ||| |||||    ||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||  |||    
T  39800427 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 39800526  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  39800527 ttatgtttt 39800535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 2209644 - 2209546
Alignment:
Q  103 atcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||||||| ||| ||| || ||||  || ||| ||||||||||||||||||||||||||||| ||||||||| || || | ||||||| ||||    
T  2209644 atcaaagaactttatttttattaaatataaggaacgttaattatgtttttgttgagtcaatgatctttg-tgttattatgatgtacggatattatgtttt 2209546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 33742765 - 33742833
Alignment:
Q  136 actttatttat-gtttttgttgagtcaatgat-ctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||| |||||| ||||||||||||| |||| |||||||| |||| |||||||||||| ||||    
T  33742765 actttatttattgtttttattgagtcaatgattctttattgttattgtaatgtatgaatattatgtttt 33742833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 40057039 - 40056987
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||| ||||||||| ||| ||||||||| |||||| ||||    
T  40057039 actttatttatgtttttattgagtcaaggatttttgttgttgttataagatat 40056987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 42837634 - 42837606
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttat 117  Q
    |||||||||||||||||||||||||||||    
T  42837634 tatgtttttgttaaatcaaagaactttat 42837606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 41039460 - 41039359
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  41039460 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 41039361  T
Q  189 ga 190  Q
    ||    
T  41039360 ga 41039359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 23626965 - 23626855
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||||||||    |||||||  || ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23626965 tatgcttttgttaaatcaaagaactttatatttga---atgtaaggaaccttatttatgtttttgttgagtcaatgatctttgttgttattgtaatatat 23626869  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  23626868 ggatattatgtttt 23626855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 38951747 - 38951634
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatattt-gttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatata 187  Q
    ||||||||||||||||||||||||||||| ||| | || ||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||| ||    
T  38951747 tatgtttttgttaaatcaaagaactttatttttagcta-atgtaagggactttatatatgtgtttgttgagtcaatgatctttgttgttattgtaatgta 38951649  T
Q  188 tgaatattatatttt 202  Q
    |||||||||| ||||    
T  38951648 tgaatattatgtttt 38951634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 22278439 - 22278351
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgtta 177  Q
    ||||||||||||||||||||||| ||||| ||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  22278439 tatgtttttgttaaatcaaagaattttatttttattaaatgtaagggactttatttatgtttttgttaagtcaatgatctttgttgtta 22278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 40714857 - 40714969
Alignment:
Q  90 atgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatg 189  Q
    |||||||||||||||||||||||||||| ||| ||| | |||||  || ||||||||||||||||||||||||||||||||||  ||||| |||| |||     
T  40714857 atgtttttgttaaatcaaagaactttatttttattaaaagtaaggaacattatttatgtttttgttgagtcaatgatctttgtctttattgtaatgtatt 40714956  T
Q  190 aatattatatttt 202  Q
     ||||||||||||    
T  40714957 gatattatatttt 40714969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 42555438 - 42555330
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||| |||||||||||| ||| ||| |||||||   ||||||||||||||||||||||||||||| ||||||||||||| |||| |||    
T  42555438 tatgcttttgttaaattaaagaactttatttttattaaatgtaaggatctttatttatgtttttgttgagtcaatgaactttgttgttattgtaatgtat 42555339  T
Q  189 gaatattat 197  Q
    | |||||||    
T  42555338 gtatattat 42555330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 8819321 - 8819429
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||| |||||||| |||||||  ||| ||| |||||||  |||||||||||||||||||||| |||||||||||||||||||||||||| |||  |||    
T  8819321 ttttgtcaaatcaaataactttacttttattaaatgtaaggaactttatttatgtttttgttgaatcaatgatctttgttgttattataatgtatagata 8819420  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  8819421 ttatgtttt 8819429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 29117142 - 29117034
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||||||| ||| |||||||| ||| ||| |||| | |||||||||||||||||||||| | ||||||||||||||| ||||| |||| ||||||||    
T  29117142 ttttgttaaataaaaaaactttatttttattaaatgtcaaagactttatttatgtttttgttaaatcaatgatctttgttattattgtaatgtatgaata 29117043  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  29117042 ttatgtttt 29117034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 43624541 - 43624426
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatg--tttttgttgagtcaatgatctttgttgttattataatat 186  Q
    |||| |||||||||||||||||||||||| ||| ||| ||||||| | ||||||| |||  ||||| || ||||||||||||||||||||||| ||||||    
T  43624541 tatgcttttgttaaatcaaagaactttatttttattaaatgtaaggggctttattaatggttttttttttagtcaatgatctttgttgttattgtaatat 43624442  T
Q  187 atgaatattatatttt 202  Q
    ||| | ||||| ||||    
T  43624441 atggaaattatgtttt 43624426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 51357289 - 51357182
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||| | |||||| |||||||| ||| ||| |||||||  |||| |||||||||| |||||||||||| ||||||||||||||| |||| |||| |||    
T  51357289 ttttgtcatatcaaataactttatttttattaaatgtaaggaactt-atttatgtttctgttgagtcaataatctttgttgttattgtaatgtatggata 51357191  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  51357190 ttatgtttt 51357182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 17120334 - 17120400
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| |||| |||| ||||||| ||||    
T  17120334 actttatttaggtttttgttgagtcaatgatcattgttgttattgtaatgtatggatattatgtttt 17120400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 19841808 - 19841753
Alignment:
Q  148 tttttgttgagtcaatgatctttgttgttattataatatatgaatattatattttc 203  Q
    |||||||||||||||||||||||||||||||| |||| || | ||||||| |||||    
T  19841808 tttttgttgagtcaatgatctttgttgttattgtaatgtacggatattatgttttc 19841753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 36464840 - 36464920
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgt 175  Q
    |||||| |||||||| |||||||| ||| ||| |||||||  |||| |||||||||||| |||||||||| |||||| ||||    
T  36464840 ttttgtcaaatcaaataactttatttttattaaatgtaaggaactt-atttatgtttttattgagtcaataatctttattgt 36464920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 40571958 - 40572025
Alignment:
Q  136 actttatttatgtttttg-ttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||||||||||||||||  ||||||||| ||||||||||||| ||||||| |||  ||||||| ||||    
T  40571958 actttatttatgttttttattgagtcaaggatctttgttgttgttataatctatcgatattatgtttt 40572025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 13807670 - 13807557
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  13807670 tatgtttttgctaaatcaaagaactttatttttattgaatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 13807571  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  13807570 gaatattatgtttt 13807557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 5704728 - 5704615
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |||    
T  5704728 tatgtttttgttaaatcaaataactttatttttattaaatgtaagtgactttatttatatttttgttgagtcaatgatctttgttgttattgtaatgtat 5704629  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  5704628 gaatattatgtttt 5704615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 31575946 - 31576059
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||    
T  31575946 tatgtttttgttaaatcaaaaaactttatttttattaaatgtaagggactttatttatgtttttgttgagtcaatgatctttgttattattgtaatgtat 31576045  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  31576046 gaatattatgtttt 31576059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 5110329 - 5110220
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaat 192  Q
    |||||||||||||||| |||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  5110329 tttttgttaaatcaaataactttatttttattaaatgtaagggacattatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaat 5110230  T
Q  193 attatatttt 202  Q
    ||||| ||||    
T  5110229 attatgtttt 5110220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 5938849 - 5938740
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaat 192  Q
    |||||||||||||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  5938849 tttttgttaaatcaaataactttatttttattaaatgtaagggactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaat 5938750  T
Q  193 attatatttt 202  Q
    | ||| ||||    
T  5938749 actatgtttt 5938740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 45151247 - 45151356
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaat 192  Q
    ||||||||||||||||||| ||||| ||| ||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  45151247 tttttgttaaatcaaagaattttatttttattaaatgtaagggactttgtttatgtttttgttgaatcaatgatctttgttgttattgtaatgtatgaat 45151346  T
Q  193 attatatttt 202  Q
    ||||| ||||    
T  45151347 attatgtttt 45151356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 13626323 - 13626414
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataat 184  Q
    ||||||||||||| ||||||||||| ||| ||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  13626323 tttttgttaaatcgaagaactttatttttattaaatgttagggactttatttatgtttttgttgagtcaatgatctttggtgttattgtaat 13626414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 45458442 - 45458503
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattat 197  Q
    |||||||||||||||||||||| ||||||||||||||||||||  |||| |||| |||||||    
T  45458442 actttatttatgtttttgttgaatcaatgatctttgttgttatggtaatgtatggatattat 45458503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 42625039 - 42625147
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||||||| ||||| | | ||| |||||    ||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||  |||    
T  42625039 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 42625138  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  42625139 ttatgtttt 42625147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 48379090 - 48379191
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  48379090 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 48379189  T
Q  189 ga 190  Q
    ||    
T  48379190 ga 48379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 11894413 - 11894302
Alignment:
Q  91 tgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatga 190  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11894413 tgtttttgttaaatcaaataactttatttttattaaatgtaagcaactttatttatgtttttgttgagtcaatgatctttgttgttattataatgtatga 11894314  T
Q  191 atattatatttt 202  Q
    ||||||| ||||    
T  11894313 atattatgtttt 11894302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 31292756 - 31292870
Alignment:
Q  85 tacgtatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataat 184  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||   ||||||||||||||    
T  31292756 tacgtatgtttttgttaaatcaaataactttatttttgttacatgtaagggactttatttatgtttttgctgagtcaatgatc---gttgttattataat 31292852  T
Q  185 atatgaatattatatttt 202  Q
     |||||||||||| ||||    
T  31292853 gtatgaatattatgtttt 31292870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 36728755 - 36728866
Alignment:
Q  91 tgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatga 190  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||     
T  36728755 tgtttttgttaaatcaaataactttatttttcttaaatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtgg 36728854  T
Q  191 atattatatttt 202  Q
    ||||||| ||||    
T  36728855 atattatgtttt 36728866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 47140911 - 47140798
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| |||    
T  47140911 tatgcttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatttttgttgttgttgtaatgtat 47140812  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  47140811 gtatattatgtttt 47140798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 29678324 - 29678432
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||||||||||||||||||||| ||| ||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  29678324 ttttgttaaatcaaagaactttatttttattaaatgtaagggaatttatttatgattttgttgagtcaatgatctttgttgttattgtaatgtatgaata 29678423  T
Q  194 ttatatttt 202  Q
     ||| ||||    
T  29678424 atatgtttt 29678432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 17562786 - 17562899
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| | ||  | |||||||||| ||||||||||| |||||||||||||||||||||| |||| |||    
T  17562786 tatgtttttgttaaatcaaataactttatttttattaaacgtcggggactttatttctgtttttgttgggtcaatgatctttgttgttattgtaatgtat 17562885  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  17562886 gtatattatgtttt 17562899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 31585233 - 31585346
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||| ||| |||||||| ||| ||| | ||  | |||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  31585233 tatgtttttgttaaattaaataactttatttttattaaacgtcggggactttatttatgtttttgttgggtcaatgatctttgttgttattgtaatgtat 31585332  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  31585333 gtatattatgtttt 31585346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 38264380 - 38264446
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  38264380 actttatttatatttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgtttt 38264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 25987482 - 25987400
Alignment:
Q  119 tttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||| || ||||| |||||||||||||||||||||||| |||||||||| |||||||| |||| |||||||||||| ||||    
T  25987482 tttgttatatctaaga-actttatttatgtttttgttgagttaatgatcttttttgttattttaatgtatgaatattatgtttt 25987400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 19884459 - 19884523
Alignment:
Q  138 tttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||    
T  19884459 tttatttatatttttgttgagtcaatgatctttgttattattgtaatgtatgaatattatgtttt 19884523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 2191843 - 2191891
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataat 184  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  2191843 actttatttatgtttttgttgagtcaatgatttttgttgttattgtaat 2191891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 52252757 - 52252714
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttatt 179  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  52252757 actttatttatgtttttattgagtcaaagatctttgttgttatt 52252714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 25294014 - 25294076
Alignment:
Q  140 tatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||| |||  ||||||| ||||    
T  25294014 tatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgatattatgtttt 25294076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 8576875 - 8576762
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  8576875 tatgtttttgttaaatcaaataactttatttttattaaattgaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 8576776  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  8576775 gaatattatgtttt 8576762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 10788601 - 10788495
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||| ||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||    
T  10788601 tatgcttttgttaaatcaaagaaatttatttttattatatgtaagagactttatttatgtttttgttgactcaatgatctttgttgttattgtaatgtat 10788502  T
Q  189 gaatatt 195  Q
    |||||||    
T  10788501 gaatatt 10788495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 35167296 - 35167404
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||||||||||| ||| |||| ||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| || | |||    
T  35167296 ttttgttaaatcaaataacattatttttattaaatgtgagagactttatttatgtttttgttaagtcaatgatctttgttgttattgtaatgtacggata 35167395  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  35167396 ttatgtttt 35167404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 7622484 - 7622403
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatcttt 170  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||  ||| ||||||||||||||||||||||||||||||||    
T  7622484 tatgtttttgttaaatcaaagaactttatctttattaaatgtaaaggacattatttatgtttttgttgagtcaatgatcttt 7622403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 28582265 - 28582153
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||||  |||||||||||||||| | ||||||||||| ||||||| |||| |||| |||    
T  28582265 tatgtttttgttaaatcaaagaaatttatatttattaaatgtaagaagctttatttatgtttttatcgagtcaatgatttttgttgctattttaat-tat 28582167  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  28582166 ggatattatgtttt 28582153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 7245534 - 7245600
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  7245534 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgtttt 7245600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 34433207 - 34433316
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaat 192  Q
    |||||||||||| ||| |||||||| | | ||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||  ||    
T  34433207 tttttgttaaattaaataactttatttgtattaaatgtaagagactttatttacatttttgttaagtcaatgatctttgttgttattgtaatgtatagat 34433306  T
Q  193 attatatttt 202  Q
    ||||| ||||    
T  34433307 attatgtttt 34433316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 642103 - 642171
Alignment:
Q  127 atgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatatt 195  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  642103 atgtaaaagactttatttatgtttttgttaagtcaatgatctttgttgttattgtaatgtatgaatatt 642171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 10408977 - 10409081
Alignment:
Q  98 gttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattat 197  Q
    |||||||||||||| |||| || | | | |||||||   ||||| ||||||||||||| |||||||||||| |||||||||||||||  |||||||||||    
T  10408977 gttaaatcaaagaagtttaaatatatcaaatgtaaggagctttagttatgtttttgttaagtcaatgatctatgttgttattataatgcatgaatattat 10409076  T
Q  198 atttt 202  Q
    |||||    
T  10409077 atttt 10409081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 5295333 - 5295220
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||  ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  5295333 tatgtttttgttaaatcaaataactttattttaattaaatgtaagggactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 5295234  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  5295233 gaatattatgtttt 5295220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 25874708 - 25874821
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||| ||| |||||||||||||| |||||||| ||||||||||||||||| |||| |||    
T  25874708 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagtgacattatttatgtttttattgagtcattgatctttgttgttattgtaatgtat 25874807  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  25874808 gaatattatgtttt 25874821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 21288222 - 21288114
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||    
T  21288222 tatgattttgttaaatcaaagaactttattttaattaaatgtaagagactttatttatgtttttgttgagtcaatgatctttattgttagtgtaatgtat 21288123  T
Q  189 gaatattat 197  Q
    |||||||||    
T  21288122 gaatattat 21288114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 3778912 - 3779025
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||| |||||||||| |||||||| ||| ||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||| || | |||    
T  3778912 tatgctttttttaaatcaaataactttatttttattaaatataagggactttatttatgtttttgttgagtcaatgatctttgttattattgtagtgtat 3779011  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  3779012 gaatattatgtttt 3779025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 27926637 - 27926739
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||    
T  27926637 tatgtttttgttaaatcaaagaacttta----------atgtaagagactttatttatgtttt-gttgagtcaatgatctttgttgttattgtaatgtat 27926725  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  27926726 gaatattatgtttt 27926739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 13826033 - 13825920
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||| |||||||||||| ||| ||  ||||||| ||| |||||||| |||||||| ||||| ||||||||||||||||| |||| |||    
T  13826033 tatgcttttgttaaattaaagaactttatttttatttaatgtaagtgacattatttatatttttgttaagtcagtgatctttgttgttattgtaatgtat 13825934  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  13825933 gaatattatgtttt 13825920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 36584476 - 36584410
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  36584476 actttatttatgtttttcttgaatcaatgatctttgttgttattataatgtatgaatattatatttt 36584410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 48251717 - 48251783
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||| ||||    
T  48251717 actttatttatgtttttgttgaatcaatgatctttgttgttattgtaatgtatggatattatgtttt 48251783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 12149138 - 12149030
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||| ||| ||||| | ||||| |||||    ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||  |||    
T  12149138 ttttgtttaatcaatgaattttatttctgttaaatgtagtgaactttatttatgtttttattgagtcaatgatctttgttgttgttataatctatcgata 12149039  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  12149038 ttatgtttt 12149030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 26188005 - 26187934
Alignment:
Q  131 aagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||| |||||| ||||||||||||||||  |||||||||| ||||||||  ||| |||||||||||||||||    
T  26188005 aagaaactttaattatgtttttgttgaggtaatgatctttattgttattgcaatgtatgaatattatatttt 26187934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 13084754 - 13084795
Alignment:
Q  138 tttatttatgtttttgttgagtcaatgatctttgttgttatt 179  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  13084754 tttatttatgtttttgttgagtcattgatctttgttgttatt 13084795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 32847650 - 32847582
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttga 157  Q
    |||||||||||| |||||||||||||| | ||||||| |||| |   ||||||||||||||||||||||    
T  32847650 tatgtttttgttgaatcaaagaactttgtttttgttaaatgttatgaactttatttatgtttttgttga 32847582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 37341418 - 37341498
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgtt 173  Q
    |||||||| |||||| ||||||||| ||||||| |||| | | ||||||||||||||||| |||| |||| || |||||||    
T  37341418 tttttgttgaatcaaggaactttatttttgttaaatgtgataaactttatttatgttttttttgaatcaaggaactttgtt 37341498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 6893 - 7006
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||| ||||| ||| ||| ||||||  ||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6893 tatgtttttgttaaatcaaagaattttatttttattatatgtaatggacctcatttatgtttttgttgagtcaatgatctttgttgttattgtaaaatat 6992  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  6993 gaatattatgtttt 7006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 22168 - 22060
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||||||| ||||| | | ||| |||||    ||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||  |||    
T  22168 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 22069  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  22068 ttatgtttt 22060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 66619 - 66580
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgt 175  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  66619 actttatttatgtttttgttgagtcaatgatctttgttgt 66580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 62527 - 62490
Alignment:
Q  159 tcaatgatctttgttgttattataatatatgaatatta 196  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  62527 tcaatgatctttgttgttattgtaatgtatgaatatta 62490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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