View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10226_high_18 (Length: 242)
Name: NF10226_high_18
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 3879475 - 3879268
Alignment:
| Q |
16 |
atgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaatagactgcaactgcggagtta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3879475 |
atgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaatgtggaagatccaacgacgctcaagtcaatagactgcaactgcggagtta |
3879376 |
T |
|
| Q |
116 |
caaaacctgcattggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctcc |
215 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879375 |
caaaacctgcattggcggggtggttaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctcc |
3879276 |
T |
|
| Q |
216 |
aacataga |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
3879275 |
aacataga |
3879268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 3865493 - 3865288
Alignment:
| Q |
16 |
atgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaatagactgcaactgcggagtta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| || || | |
|
|
| T |
3865493 |
atgaagcagaaacatacttgcgacagtacaccaatctaatattctgcaaacgtggaagatccaacgacaccgaagtcaatagactgcaattgtcaagctc |
3865394 |
T |
|
| Q |
116 |
caaaacctgcattggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctcc |
215 |
Q |
| |
|
|||||||||||||||| || || ||||| | || |||||||| ||||||||||| ||| ||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
3865393 |
caaaacctgcattggc--agttatgtcatgtactcgtcctaatactcgggaattcagacaagtcgttaatatcaatatctggaacaaataacatacctcc |
3865296 |
T |
|
| Q |
216 |
aacataga |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
3865295 |
aacataga |
3865288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University